Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i21
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    30   0.29 
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   3.6  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.7  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   4.7  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    26   4.7  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   6.2  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   6.2  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   8.3  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 482 TNTEEHNDQRNIGYHISPNVSNGSPEV 402
           +N++ HN   NIG   +P VS GSP V
Sbjct: 49  SNSQTHNISFNIGTPTAPTVSTGSPAV 75


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 295 WPLFFTKEIV*AV*KLMFLLDALIFDCCTY 206
           WPL FT  +       ++LLD L  +C  Y
Sbjct: 76  WPLMFTAFLCLTFVAFLYLLDRLYINCYEY 105


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 182 ILCVFTIYKTTFLTIYSKASCHLKHAAFTCKFF 84
           ILC F +Y+TT    YS   C +K   F  KFF
Sbjct: 58  ILCFFLVYRTT----YSFGVCLMKRFLFN-KFF 85


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 518 RVPMATRAAHVCTNTEEHNDQRNIGYHISPN 426
           R+ ++    H C   + H+D++ + Y + PN
Sbjct: 311 RISLSKVYNHYCPYIDTHDDEKILSYSLKPN 341


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 412 HQKSILIYPQMNRILKL*IQTTCHT 338
           H K+ LI+ ++   ++L I TTC T
Sbjct: 53  HNKNFLIFQELEEDVRLCIPTTCDT 77


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 584 TGPTTPITISRTGKNL 537
           TGP TP++IS T +N+
Sbjct: 303 TGPPTPVSISNTPENI 318


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 577 QLHPSLSAEQEKTCHICASLEFQWLQ 500
           +L+  LS  Q  TC  C SL   WLQ
Sbjct: 276 ELNEYLSWMQPFTCDSCGSLHENWLQ 301


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 247 LVSIPLIRFLW*RIKARYPDAFSFQETKGNMYDMLSEFRVSEFD 378
           L  +PL+  ++ ++K +   + SFQ+   NMY  + +   S  D
Sbjct: 519 LTKLPLLSTVFVKLKLQGIFSSSFQQVSNNMYSWIYDHVFSSSD 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,139
Number of Sequences: 5004
Number of extensions: 47634
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)