Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i21
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-9|CAC42297.1|  143|Caenorhabditis elegans Hypothetical pr...    41   8e-04
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z78411-4|CAB01645.2|  370|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z79755-9|CAC42297.1|  143|Caenorhabditis elegans Hypothetical
           protein F43G9.13 protein.
          Length = 143

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 20/61 (32%), Positives = 34/61 (55%)
 Frame = +1

Query: 400 LTSGDPLDTFGEMWYPMFLWSLCSSVFVHTCAALVAIGTLRKHKYGKFFPVLLIVMGVVG 579
           L SG  ++ + E+   +FLW   S + +   A ++++ TLRKH Y  F P+  I+M  + 
Sbjct: 33  LLSGKYMNDWWEITLSIFLWMSLSFMVISLGATILSLFTLRKHPYVCFIPIPFIIMMFII 92

Query: 580 P 582
           P
Sbjct: 93  P 93


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 170 FTIYKTTFLTIYSKASCHLKHAAFTCKF 87
           F  Y+T+FLT Y K S  L+H     +F
Sbjct: 653 FLTYQTSFLTSYCKLSIFLEHFMMISQF 680


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 170 FTIYKTTFLTIYSKASCHLKHAAFTCKF 87
           F  Y+T+FLT Y K S  L+H     +F
Sbjct: 789 FLTYQTSFLTSYCKLSIFLEHFMMISQF 816


>Z78411-4|CAB01645.2|  370|Caenorhabditis elegans Hypothetical
           protein F02D8.3 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
 Frame = -1

Query: 553 EQEKTCHICASLEF----------QWLQEPHMCAQTLKNIMTKGTLGTTFHQTYLTDHQK 404
           E EK  H+C  L F           +        + +KN+ +    GT   Q Y+TDH K
Sbjct: 204 ESEKRRHLCQFLRFLAYSYGANLMMFSSRMEQFPKLVKNMTSHFAFGTVCPQGYMTDHNK 263

Query: 403 SILI 392
            + +
Sbjct: 264 PMFV 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,499,218
Number of Sequences: 27780
Number of extensions: 271399
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)