Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24i17
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 244 1e-65
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 30 0.24
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 27 2.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 26 4.0
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 5.2
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 6.9
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 244 bits (596), Expect = 1e-65
Identities = 105/179 (58%), Positives = 140/179 (78%)
Frame = +1
Query: 88 MKVLSEDRTRILFEKLTKYIGVNVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKP 267
M+ L+ + T+ FEKL +YIG N+ LIDRPD +CFR +KDRVYY+SE+ + +A +V
Sbjct: 1 MRPLTHEETKTFFEKLAQYIGKNITHLIDRPDDPHCFRLQKDRVYYVSERAMKMATSVAR 60
Query: 268 DNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGR 447
NL+S G CFGKFTKTNKFRLHITAL YI+ YA +K+WVK + E FLYG+H++K+ +GR
Sbjct: 61 QNLMSLGICFGKFTKTNKFRLHITALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVGR 120
Query: 448 ITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVGEYIRSEDTL 624
IT++TP+HQGVV+ +M+D P+GFGV +R+T E R +P A + FHQADVGEY+R EDTL
Sbjct: 121 ITDDTPQHQGVVIYSMNDTPLGFGVTARSTLELRRLEPTAIVAFHQADVGEYLRDEDTL 179
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 30.3 bits (65), Expect = 0.24
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 373 KVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRH 552
++ VK SA YG ++ GL R ++ +V++T I G+A +T E
Sbjct: 273 RIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIVLITTKGEAIAVGIAQMSTVELST 332
Query: 553 AD 558
D
Sbjct: 333 CD 334
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 206 FSLKQYVPSGLSISN-LTFTPMYLVSFSNNILVRSSDNTFI 87
FS K + SISN TP SFSN +L +S + ++
Sbjct: 290 FSFKNLLQDASSISNNFEITPESWCSFSNQLLFSTSKSDYV 330
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S VV +TP I S +VNT+TP
Sbjct: 1334 SSSVLNSSTPITSSTVVNSSTPITSSTVVNTSTP--ITSSTVVNTSTP 1379
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S VV +TP I S +VNT+TP
Sbjct: 1406 SSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTP--ITSSTVVNTSTP 1451
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S VV +TP I S +VNT+TP
Sbjct: 2174 SSSVLNSSTPITSSTVVNSSTPITSSTVVNTSTP--ITSSTVVNTSTP 2219
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S VV +TP I S +VNT+TP
Sbjct: 2246 SSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTP--ITSSTVVNTSTP 2291
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S+V+ +TP I S +VNT+TP
Sbjct: 542 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 587
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S+V+ +TP I S +VNT+TP
Sbjct: 1430 SSTVVNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 1475
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S+V+ +TP I S +VNT+TP
Sbjct: 2318 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 2363
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S+V+ +TP I S +VNT+TP
Sbjct: 2654 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 2699
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S+V+ +TP I S +VNT+TP
Sbjct: 2726 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 2771
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S+V+ +TP I S +VNT+TP
Sbjct: 2882 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 2927
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S+V+ +TP I S +VNT+TP
Sbjct: 2978 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 3023
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + S T T+V + S+V+ +TP I S +VNT+TP
Sbjct: 3242 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNTSTP 3287
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + + T T+V + S VV +TP I S +VNT+TP
Sbjct: 1154 SSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTP--ITSSTVVNTSTP 1199
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 617 SSERIYSPTSAWWKTIVAKGSACRHSAVVLEATPKPIGISDIVNTTTP 474
SS + + T T+V + S VV +TP I S +VNT+TP
Sbjct: 1466 SSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTP--ITSSTVVNTSTP 1511
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 178 PDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYIS 357
PD T F K V Y+SE L+ +V + + + + N FRL T L ++
Sbjct: 346 PDSTLVFVPTKHHVEYVSELLVQAGYSV--SKIYGSLDQEARLNEINNFRLGKTNLLVVT 403
Query: 358 PYA 366
A
Sbjct: 404 DVA 406
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 42 NSRVFIFREYNKIIEYESIIRRSYKNIIREANQIHWSKR*VTNRQT*WHILLQREERQSV 221
+ RVF R+ +K+ ES+ R + I + + I W V + H+++ +ER SV
Sbjct: 549 DGRVFFLRQDDKLSTLESLPSREAQEEITDLSDILWINSPVDKLE---HLIVGCKERISV 605
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 274 LVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLY 414
L++ G + K K L I A +Y Y KVW P+ +LY
Sbjct: 338 LLACGATYTKDLKPTNTLL-IAASSYGQKYGAAKVWNIPTVHHSWLY 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,832
Number of Sequences: 5004
Number of extensions: 57234
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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