Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i17
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637    175   2e-44
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379...    33   0.25 
07_03_1408 - 26353389-26355191                                         31   1.0  
03_03_0094 + 14378953-14380728                                         30   1.3  
06_01_0085 - 678144-678335,678466-678639,678721-678912,679756-67...    29   3.1  
12_01_0251 - 1858815-1860209                                           28   7.1  

>07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637
          Length = 216

 Score =  175 bits (426), Expect = 2e-44
 Identities = 85/187 (45%), Positives = 119/187 (63%), Gaps = 8/187 (4%)
 Frame = +1

Query: 88  MKVLSEDRTRILFEKLTKYIGVNVKLLIDRPD--------GTYCFREKKDRVYYISEKLL 243
           M+ L E  T+++FEKL K+ G N+K L++RP         G YC R  K+RVYY SE L+
Sbjct: 1   MRALDEKETKMVFEKLFKFTGPNLKHLLERPAVEGPDPQAGRYCLRLHKNRVYYASEALV 60

Query: 244 HLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHH 423
             A  V    L   GT  GKFT    F L + AL  ++ +A  +VW+KP  E+ FL+G+ 
Sbjct: 61  RRATAVARPRLAGVGTPIGKFTHGGAFHLTVHALDLLAAHARRRVWLKPDTERSFLFGNS 120

Query: 424 IIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVGEY 603
           + KS L RITENT  + GVVV++M+D+P+GFG+A+R+  +CR AD  A +V HQ+D GEY
Sbjct: 121 VPKSSLARITENTKANDGVVVMSMADVPLGFGIAARSAQDCRKADTNAVVVLHQSDAGEY 180

Query: 604 IRSEDTL 624
           +R E+ L
Sbjct: 181 LRREEEL 187


>12_01_0482 -
           3791630-3791698,3791983-3792124,3792202-3792344,
           3792833-3792958,3794307-3794444,3794540-3794622,
           3794738-3794825,3796147-3796344
          Length = 328

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 426 HQKWLRQDNREYTETSRCGGINDVRYPDW 512
           HQ WLR    +  E+SR   +  + YPDW
Sbjct: 198 HQLWLRDVMVQCNESSRVHSVRHIEYPDW 226


>07_03_1408 - 26353389-26355191
          Length = 600

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 382 VKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTA 540
           VK SA     YG  ++  GL R   +    + VV++T     I  G+A  TTA
Sbjct: 315 VKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAEMTTA 367


>03_03_0094 + 14378953-14380728
          Length = 591

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 382 VKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTA 540
           VK SA     YG  ++  GL R        + VV++T     I  G+A  TTA
Sbjct: 319 VKDSAVNAICYGAKLMIPGLLRFENEIEVGEEVVLMTTKGEAIAIGIAEMTTA 371


>06_01_0085 -
           678144-678335,678466-678639,678721-678912,679756-679911,
           680091-680158,680878-681127
          Length = 343

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 510 WLWRSFKNDGRMSTR*SFGDDCLPPG 587
           W W+ FK+     T  SFGD  +P G
Sbjct: 155 WTWKKFKSPKESDTELSFGDFTVPNG 180


>12_01_0251 - 1858815-1860209
          Length = 464

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 25/107 (23%), Positives = 39/107 (36%)
 Frame = +1

Query: 160 KLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHIT 339
           +LL    D  Y  R           +L  +A +  P +    G+   K    + +R   T
Sbjct: 200 RLLAADDDAMYSSRSAHLNQMASIAQLQQMAVSSCPPSTGGGGSVQYKDDDDDPYRSPAT 259

Query: 340 ALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGV 480
            LT++SP A       P+A   FL     +   +  + E    H GV
Sbjct: 260 PLTFVSPPASTPHLQMPAALANFLSAVRALSPKIVVVAEQDADHNGV 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,936
Number of Sequences: 37544
Number of extensions: 353494
Number of successful extensions: 869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)