Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i13
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.15 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   0.82 
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    25   4.4  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   4.4  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 30.3 bits (65), Expect = 0.15
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 102 SSCFANESTTGSESRPAEKIRRETQRADSWV 194
           SSC  +ES    ES PA K   E    DSW+
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWM 329


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 8/21 (38%), Positives = 18/21 (85%)
 Frame = +2

Query: 398 FDFYFIMYIRLYKNIKYYIQE 460
           FD++F+  ++L+K+++Y +QE
Sbjct: 441 FDYFFLYDLKLWKSLRYKLQE 461


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 353 YKNKWSV-KEKLDHMPFDFYFIMY 421
           + NK+ + ++KL+H+PF  YF  Y
Sbjct: 267 FLNKFDLFRKKLEHVPFQDYFPQY 290


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 189 WVRLHGELFVEFDEYGYRHISYCQLASS 272
           W    GE   EF   GY+H + CQLA S
Sbjct: 203 WNSETGEKICEFRR-GYQHTAVCQLAFS 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,600
Number of Sequences: 5004
Number of extensions: 31118
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)