Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i13
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   3.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +3

Query: 186 SWVRLHGELFV----EFDEYGYRHISYCQ 260
           SW R  G++ V    EFDE+G    S CQ
Sbjct: 251 SW-RADGQIMVDYEDEFDEFGDSKCSLCQ 278


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 317 CDICKRAFCSKD 352
           C IC+R +CS++
Sbjct: 38  CVICERVYCSRN 49


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 317 CDICKRAF 340
           CD+C+RAF
Sbjct: 150 CDVCERAF 157


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 171 TQRADSWVRLHGELFVEFDEYGYR 242
           T  A   V++  ELF  FD+   R
Sbjct: 288 TYSASELVKILNELFARFDQLSER 311


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 314 LCDICKRAFCS 346
           +C+ICKR + S
Sbjct: 34  ICNICKRVYSS 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,149
Number of Sequences: 438
Number of extensions: 2162
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)