Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i11
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    28   0.70 
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    27   1.6  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   2.2  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   2.2  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   2.2  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    26   2.8  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   2.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   2.8  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   3.8  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   3.8  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   5.0  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.6  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   6.6  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   6.6  
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    24   8.7  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    24   8.7  

>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 273 NDLNVLIKKGKLHSDTINLKRKRSRNNTLNNIKMKPLEL 157
           +D NV  K      D +N+K KR+      N K K LEL
Sbjct: 195 DDNNVRTKSSLNDHDKVNMKEKRNLELAFMNSKRKKLEL 233


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 318 LGTGMRINEARQLSVNDLNVLIKKGKLHSD-TINLKRKRSRN 196
           L + +R+  +R  S N+ + + K    +SD +I+ KR+RSRN
Sbjct: 236 LSSLIRLTRSRARSSNEASYVEKDESSNSDDSISYKRRRSRN 277


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 306 MRINEARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTLNN-IKMKPLELAREI 145
           +++ + RQ          K+ K   D  NLKRKRS ++  +N  K K  ++AR I
Sbjct: 608 IQVVKRRQEKEKSFRQKAKQLKQQEDEDNLKRKRSESDVEDNEAKEKQAKVARII 662


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 180 IKMKPLELAREIYSRNPTI 124
           + +KP EL RE++SR+P +
Sbjct: 866 LNLKPSELERELFSRSPDL 884


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 128 PFCKYLKTPRRPLKISGGSSKSRASRWN 45
           P  KYL T  RP K + G+ K     WN
Sbjct: 83  PLGKYLSTWERPGKEADGTPKQNMKVWN 110


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 125 FCKYLKTPRRPLKI 84
           FCKYL TP  P+++
Sbjct: 226 FCKYLLTPHEPVRV 239


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -3

Query: 300 INEARQLSVNDLNVLIKKGKLHSDTI-------NLKRKRSRNNTLNNIKMKPLELAREI 145
           I+  R+L++     L+K G+LHS +        N K ++ R + +N +   P  L + I
Sbjct: 117 ISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRMNILVCTPGRLLQHI 175


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 294 EARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTLNNI 178
           + R+L+V      ++K + HS   +  R++S NN+ +++
Sbjct: 776 DIRRLAVESAQEAVQKAREHSQLFDANRQQSPNNSSSDM 814


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -3

Query: 249 KGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIYSRN-PTILQISKNTSTPFKDFRRL 73
           K     + I+ K K  R     N+++  + L R+       T+ +  ++     +   RL
Sbjct: 508 KASSAQEAIDKKEKMEREMKNKNLELADMILERDRARHELETMHRSQRDKQESTERELRL 567

Query: 72  LEESGVEMERPRSNMIRHYLS 10
           L+E    +ER +S+ + + LS
Sbjct: 568 LQEKAASLERNKSSEVSNLLS 588


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 285 QLSVNDLNVLIKKGKLHSDTINLKRKRSRNN 193
           +LSVNDLN  +  G +      +K++ S+N+
Sbjct: 3   KLSVNDLNDFLSPGAVCIKPAQVKKQESKND 33


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 225 INLKRKRSRNN---TLNNIKMKPLELAREIYSRNPTILQISKNTSTPFKDF 82
           IN +  R + N   +LNN +   LE+      +NPT +   +N +T + D+
Sbjct: 583 INFEAPRYKTNIVHSLNNEQKYVLEVKNGTSEKNPTRIVALENGNTKWMDY 633


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = -3

Query: 273 NDLNVLIKKGKLHSDTINLKRKRSRN-NTLNNIKMKPLELAREIYSRNPTI-LQISKNTS 100
           N   ++ K+    S  +     R  +  T   +   PL++     S++P +  ++S  + 
Sbjct: 139 NSRKLIPKRSAKFSSMVGSSDTRCNSPTTARGLATSPLQI-NPTTSKSPLLNKKLSSTSQ 197

Query: 99  TPFKDFRRLLEESGVEMERPRSNMIRHYLSSNF 1
            PF+  RR  +ESG    +   N++   L  +F
Sbjct: 198 EPFRTSRRSGQESGDVTTKMLRNLLHKRLWISF 230


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -3

Query: 300 INEARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTLNNIKMKPLELAREIYSRNPTIL 121
           +N+  +L  N   +LI     H    NL   RSR  +L NI +  +++   +  +    +
Sbjct: 538 VNKKGKLQYNIPGLLIIDTPGHESFTNL---RSRGTSLCNIAILVIDIMHGLEPQTIESI 594

Query: 120 QISKNTSTPF 91
           ++ ++  TPF
Sbjct: 595 RLLRDQKTPF 604


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 55  DARLFEEPPEIFKGRRGVFRYL 120
           D+  F+E P+IFK    + RY+
Sbjct: 9   DSSFFKENPKIFKDEHELLRYI 30


>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 303 RINEARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNNTL 187
           +I   RQ   +   + + + KLH   I+ +R+R + N +
Sbjct: 69  KIRTRRQAKADRERMELLQAKLHQKVIDRRRRREKRNKM 107


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 234 SDTINLKRKRSRNNTLNNIKMKPLELAREIYSRNP 130
           S  + LKRK    +T NN   K    +  +  +NP
Sbjct: 286 SSALYLKRKAEEESTNNNKWAKKFSTSSNVLDKNP 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,053
Number of Sequences: 5004
Number of extensions: 26036
Number of successful extensions: 99
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)