Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i11
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.4  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 297 NEARQLSVNDLNVLIKKGKLHSDTINLKRKRSRNN-TLNNIKMKP 166
           N + ++ V D  VL  K +L +DT+ +    S+N  T+N  K+ P
Sbjct: 483 NGSLEVDVIDGRVLSVKRELGNDTVIVMMNFSKNPVTVNLTKLHP 527


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 325 HHVRDGYAN*RSAPTQRERSQRANQKRKTAQRHD 224
           H  R+ Y N       R+RS+   + R+  Q H+
Sbjct: 239 HEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHN 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,452
Number of Sequences: 438
Number of extensions: 1814
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)