Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i08
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   159   1e-40
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.71 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   0.93 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   1.6  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   3.8  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    25   5.0  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   5.0  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   6.6  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  159 bits (387), Expect = 1e-40
 Identities = 75/99 (75%), Positives = 89/99 (89%)
 Frame = +2

Query: 134 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 313
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 314 TPCGEGSKTWDRFQMRIXKRVIDLHSPSEIVKQITSINI 430
           TP GEGSKTW+ ++MRI KR+IDLHSPSEIVKQITSI+I
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHI 106


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 116  VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 265
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 107 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 205
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 127 RHRETPGRGLPYSP 168
           R  ETPGR LP+SP
Sbjct: 163 RANETPGRNLPFSP 176


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 88  IPAEINNFSIKNCSALNRRNL 26
           + +E+N+  IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +2

Query: 251 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIXKRVIDLHSPSEI 403
           K+ +KGP  +P K+   T  ++P    S + + F+     R+I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 262  KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESD 378
            K P+ +ANQ P   +  N+ W +    G FS+ N    D
Sbjct: 916  KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 308 RKTPCGEGSKTWDRFQM 358
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,934
Number of Sequences: 5004
Number of extensions: 34056
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)