Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24i08
(430 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20 pro... 171 1e-42
BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20 p... 171 1e-42
BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20 p... 171 1e-42
AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20 p... 171 1e-42
AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20 p... 113 2e-25
D25538-1|BAA05021.2| 1088|Homo sapiens KIAA0037 protein. 30 3.8
BC126271-1|AAI26272.1| 1080|Homo sapiens adenylate cyclase 7 pro... 30 3.8
M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein. 29 8.8
AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen pr... 29 8.8
AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen pr... 29 8.8
AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen pr... 29 8.8
AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1 p... 29 8.8
AB029009-1|BAA83038.1| 902|Homo sapiens KIAA1086 protein protein. 29 8.8
>L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 171 bits (415), Expect = 1e-42
Identities = 84/103 (81%), Positives = 90/103 (87%), Gaps = 1/103 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIXKRVIDLHSPSEIVKQITSINI 430
TTRKTPCGEGSKTWDRFQMRI KR+IDLHSPSEIVKQITSI+I
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISI 106
>BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 171 bits (415), Expect = 1e-42
Identities = 84/103 (81%), Positives = 90/103 (87%), Gaps = 1/103 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIXKRVIDLHSPSEIVKQITSINI 430
TTRKTPCGEGSKTWDRFQMRI KR+IDLHSPSEIVKQITSI+I
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISI 106
>BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 171 bits (415), Expect = 1e-42
Identities = 84/103 (81%), Positives = 90/103 (87%), Gaps = 1/103 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIXKRVIDLHSPSEIVKQITSINI 430
TTRKTPCGEGSKTWDRFQMRI KR+IDLHSPSEIVKQITSI+I
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISI 106
>AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 171 bits (415), Expect = 1e-42
Identities = 84/103 (81%), Positives = 90/103 (87%), Gaps = 1/103 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIXKRVIDLHSPSEIVKQITSINI 430
TTRKTPCGEGSKTWDRFQMRI KR+IDLHSPSEIVKQITSI+I
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISI 106
>AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20
protein.
Length = 60
Score = 113 bits (272), Expect = 2e-25
Identities = 52/56 (92%), Positives = 54/56 (96%)
Frame = +2
Query: 263 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIXKRVIDLHSPSEIVKQITSINI 430
KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRI KR+IDLHSPSEIVKQITSI+I
Sbjct: 1 KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISI 56
>D25538-1|BAA05021.2| 1088|Homo sapiens KIAA0037 protein.
Length = 1088
Score = 29.9 bits (64), Expect = 3.8
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 64 KSCLSRPEFNKQHGSRC-SVRQRHRETPGRGL-PYSPHQDHSYFSQCALTREGL 219
+ +S E + +G R SV QRHR TP R + P +D SY + EGL
Sbjct: 511 RESVSSGETHVPNGRRPKSVPQRHRRTPDRSMSPKGRSEDDSYDDEMLSAIEGL 564
>BC126271-1|AAI26272.1| 1080|Homo sapiens adenylate cyclase 7
protein.
Length = 1080
Score = 29.9 bits (64), Expect = 3.8
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 64 KSCLSRPEFNKQHGSRC-SVRQRHRETPGRGL-PYSPHQDHSYFSQCALTREGL 219
+ +S E + +G R SV QRHR TP R + P +D SY + EGL
Sbjct: 503 RESVSSGETHVPNGRRPKSVPQRHRRTPDRSMSPKGRSEDDSYDDEMLSAIEGL 556
>M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein.
Length = 269
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 245 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIXKRVIDLHSPSEIVKQIT 418
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen
protein.
Length = 261
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 245 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIXKRVIDLHSPSEIVKQIT 418
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 245 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIXKRVIDLHSPSEIVKQIT 418
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 245 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIXKRVIDLHSPSEIVKQIT 418
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1
protein.
Length = 255
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 245 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIXKRVIDLHSPSEIVKQIT 418
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 1 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 57
>AB029009-1|BAA83038.1| 902|Homo sapiens KIAA1086 protein protein.
Length = 902
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +1
Query: 145 GRGLPYSPHQDHSYFSQCALTREGLC*PNQWSQETEAACKGPSPHANQDPA 297
G+ ++D YF AL + + T+ AC PSPH + A
Sbjct: 57 GQSAAARSYEDRPYFQSAALQSGRMTAADSGQPGTQEACGQPSPHGSHSHA 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,404,861
Number of Sequences: 237096
Number of extensions: 1431935
Number of successful extensions: 3182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3182
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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