Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24i03
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 30 0.39
SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa... 29 0.52
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 2.1
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 2.8
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 27 2.8
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 27 3.7
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 27 3.7
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 27 3.7
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 26 6.4
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 26 6.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 8.5
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 8.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 8.5
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc... 25 8.5
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 8.5
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces... 25 8.5
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 29.9 bits (64), Expect = 0.39
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -2
Query: 612 QTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 472
QT +LGH N +Q +++ + + L +++++ +LLN+H+
Sbjct: 175 QTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHK 221
>SPBC1711.14 |rec15||meiotic recombination protein
Rec15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 29.5 bits (63), Expect = 0.52
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 624 EIANQTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQI 508
E+ NQT+ LG +V Q LV ++Q+N+ QQ+
Sbjct: 45 EVVNQTIGQLGRSISEVQQQNSQLVLQSLNQINMSMQQV 83
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 689 LVHGISKNVSSDKNVEETELFMRLPIKRSSTLATETIRSCSILFILLIC 543
++HG+ + + E F +KR TL TE + S ILL C
Sbjct: 603 IIHGLERLKADIALHSEILCFQLYDLKRDGTLRTEEVVELSESLILLCC 651
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 289 VTREHCLIDNDIYDLSKNTWNC 354
V+R+H +++ YDL TWNC
Sbjct: 127 VSRKHAVVE---YDLDDQTWNC 145
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 2.8
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Frame = +1
Query: 265 DDKNNPESVTREH------CLIDNDIYDLSKNTWNCRFNRCIKRKVEHQVKKRPPTWRHN 426
D+K N ES + L++ + K+T++ + IK + + ++KK P R
Sbjct: 124 DEKENDESEFEDGQQGFIPLLVNRNSDPSEKSTFSLNILKAIK-ETDEEIKKNPGKARLW 182
Query: 427 VR-AKYTEG---DTATKGDLMHIQEELMYENDLLKMNIELMHAHINKINNMLHDLIVS 588
++ +Y E D + + I+ +L EN+ + + ++ + ++ H+++VS
Sbjct: 183 IKMCEYQERLLFDEFRRSNSDDIKGKLKIENNSRSVKLSILEKALKEVKGCDHEILVS 240
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 547 INKINNMLHDLIVSVAKVDERLIGNLMNNSVSSTFLSDDTFLLMPCTNPP 696
IN++NN LH+ + +V ++L G L ++ LS D M PP
Sbjct: 50 INELNNSLHNFDFKIKRVQDQLDGRL---TLHFQNLSGDPVSQMATPYPP 96
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 582 YQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 472
Y ++ ++ + LN+H+ ++ +H LLN H+
Sbjct: 105 YNILLPLLLTPSLLQGPLNLHYADLLLLHLYLLNCHE 141
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 310 IDNDIYDLSKNTWNCRFNRCIKRKVEHQVKK 402
IDN+I DL KN + + + ++ HQ+KK
Sbjct: 94 IDNNISDLKKNLHSNKKLEAVLKEELHQIKK 124
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 424 NVRAKYTEGDTATKGDLMHIQEELMYENDLLKMNIELMHAHINKI 558
N+R ++TE + ++ L+ E D L ++E H I +I
Sbjct: 320 NLRKRFTEQVRVEETRFRQWEQRLIAERDSLNKDLEAQHVQIKQI 364
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 56 RHDLLHVWYAK*LLFCRF 3
R+D LHVW LL C+F
Sbjct: 20 RYDTLHVWKLIKLLICKF 37
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 159 RDRGHCASSRRREYDSQTKVYVHHAPSKSCVSAH 260
R R + A SR Y+ ++Y H + S C+S +
Sbjct: 479 RHRSNSAGSRFDAYEPIPQLYTHFSHSSECLSVN 512
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 436 KYTEGDTATKGD-LMHIQEELMYENDLLKMNIELMHAHINKINNMLHDLIVSVAKVDERL 612
+++E +T K L+ + E L+ ND L +I+ H + KI + + S+A L
Sbjct: 923 EHSEDNTKEKHQQLLDLLESLVGNNDNLIDSIKTPHTELQKITDHVLKGTTSLANHTNEL 982
Query: 613 IG 618
+G
Sbjct: 983 LG 984
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 582 YQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQVAFGG 457
Y V HI +V + Q+ V F+ F + + +HQ FGG
Sbjct: 541 YGKVVHIA-VVPNELGQIFVKFENADFAEKAITGLHQRWFGG 581
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 8.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Frame = +1
Query: 454 TATKGDLMHIQ---EELMYE----NDLLKMNIELMHAHINKINNMLHDLIVSVAKVDERL 612
TA L H+Q EEL+ + + L N+ + K + +HD VAK+D +
Sbjct: 537 TAANNGLSHLQNFSEELLKKRKLFSSLFSNNVSYKKSKKLKRTHTVHDKCQKVAKLDHYI 596
Query: 613 IGNLMNNS 636
N+ NS
Sbjct: 597 RDNIELNS 604
>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
Arg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 541 AHINKINNMLHDLIVSVAKV 600
A + NN+LHDL+++ AKV
Sbjct: 165 AWVGDANNVLHDLMIANAKV 184
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 85 SRLECHDDTDECQVYILDAEG 147
SR EC DD DE + DA+G
Sbjct: 274 SRCECLDDLDEPTHFAYDAQG 294
>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 196
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 639 NRIVHEIANQTLVHLGH 589
N+ +H +A TL+ LGH
Sbjct: 20 NKTLHNVAKDTLIQLGH 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,961
Number of Sequences: 5004
Number of extensions: 59552
Number of successful extensions: 235
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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