Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24h23
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   7.3  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   7.3  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   9.6  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 352 GCVEWRVGWVL 384
           GC  WRVGW++
Sbjct: 252 GCTGWRVGWLI 262


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 425 RARCSLYF*LYDYSLK*YYTIRTHYDYYNIN 517
           R   SLY+ L D+SL       THYD   +N
Sbjct: 17  RVPTSLYYSLSDFSLSAISIFPTHYDQPYLN 47


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = -1

Query: 164 SFTLSIIIIQLFLNFMIFFRNSIVTLHRLSLSRGALCALLDLI 36
           +F +S+++   +  + +F+R S  +L  L+     LC ++ L+
Sbjct: 38  AFYVSLLVWNFYFGYRVFYRISKYSLIDLTYKLCLLCGIVTLL 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,056
Number of Sequences: 5004
Number of extensions: 29775
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)