Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24h23
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    29   3.8  
AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical ...    28   5.1  

>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 626 STHKIIINNNNRTDKNHP*KHYNKNLNIKTHLKQTLY*YYSNHSVYVLYNII 471
           S  ++ IN+NN    N+     +   NIKT   Q LY  ++N  V   +NII
Sbjct: 579 SWEEVKINHNNILSSNN-----SNEENIKTAFDQVLYPCFTNQQVIGTFNII 625


>AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical
           protein Y87G2A.3 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 FDFSFTLSIIIIQLFLNFMIFFRNSIVTLHRLSLSRG 63
           F   +   I   + F  F IF+ N +V  +RLSLS G
Sbjct: 224 FTVKYLKQIKFFKFFNLFQIFYENGLVDKNRLSLSPG 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,222,691
Number of Sequences: 27780
Number of extensions: 161364
Number of successful extensions: 373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)