Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24h23
(656 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 26 0.28
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 26 0.36
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 26 0.36
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 26 0.36
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 25 0.64
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 25 0.84
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 23 1.9
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 23 2.6
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 23 3.4
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 23 3.4
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 7.8
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 7.8
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 26.2 bits (55), Expect = 0.28
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 632 TSSTHKIIINNNNRTDKNHP*KHYNKNLNIKTHLKQTLY 516
+S ++K I NNNN + N+ +YN N N + K+ Y
Sbjct: 83 SSLSNKTIHNNNNYNNNNY--NNYNYNNNNYNNYKKLYY 119
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 25.8 bits (54), Expect = 0.36
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 45 EERTQRSSAQRESM*RYDRISKKNHKI*KKLYNDY 149
E R R +++ S R +R K HKI L N+Y
Sbjct: 55 EYRKYRETSKERSRDRKEREKSKEHKIISSLSNNY 89
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 25.8 bits (54), Expect = 0.36
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 45 EERTQRSSAQRESM*RYDRISKKNHKI*KKLYNDY 149
E R R +++ S R +R K HKI L N+Y
Sbjct: 55 EYRKYRETSKERSRDRKEREKSKEHKIISSLSNNY 89
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 25.8 bits (54), Expect = 0.36
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 45 EERTQRSSAQRESM*RYDRISKKNHKI*KKLYNDY 149
E R R +++ S R +R K HKI L N+Y
Sbjct: 55 EYRKYRETSKERSRDRKEREKSKEHKIISSLSNNY 89
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 25.0 bits (52), Expect = 0.64
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 653 AAXFTNKTSSTHKIIINNNNRTDKNHP*KHYNKNLNIKTHLKQTL 519
A +N++S++ N+ KN HY + +++THL+ TL
Sbjct: 97 ATGLSNRSSTSS----NDPKNQYKNQNNNHYTSHQHLRTHLRGTL 137
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 24.6 bits (51), Expect = 0.84
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 632 TSSTHKIIINNNNRTDKNHP*KHYNKNLNIKTHLKQTLY*YYSN 501
+S ++K I NNNN + N+ +YN N + + + YY N
Sbjct: 305 SSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVPVPVPIYYGN 348
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 632 TSSTHKIIINNNN-RTDKNHP*KHYNKNLNIKTHLK 528
+S ++K I NNNN + + N+ + N N N K + K
Sbjct: 83 SSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYK 118
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 23.0 bits (47), Expect = 2.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 366 PLDTTALTNITYSPLTETHSTNY 298
P T+A Y+PL E H +Y
Sbjct: 186 PTVTSACVGSAYTPLKEDHDDHY 208
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 3.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 629 SSTHKIIINNNNRTDKNHP*KHYNKNLNIK 540
++ +K NNNN + N+ K Y +NI+
Sbjct: 91 NNNYKYNYNNNNYNNNNYNKKLYYNIINIE 120
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 3.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 629 SSTHKIIINNNNRTDKNHP*KHYNKNLNIK 540
++ +K NNNN + N+ K Y +NI+
Sbjct: 91 NNNYKYNYNNNNYNNNNYNKKLYYNIINIE 120
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 3 FTIYFLIMNVFY 38
F ++FL +NVFY
Sbjct: 431 FPLFFLAINVFY 442
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.4 bits (43), Expect = 7.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -1
Query: 629 SSTHKIIINNNNRTDKNHP*KHYNKNLNIKTHLKQTLY*YYSNHSVYVLYNII 471
SS I+NNN N+ +YN N N + Y+N+ + YNII
Sbjct: 316 SSLSNKTIHNNNNYKYNYNNNNYNNN-NYNNN--------YNNNCKKLYYNII 359
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,928
Number of Sequences: 438
Number of extensions: 2478
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -