Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24h19
         (125 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   4.2  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    23   4.2  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    23   4.2  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    23   5.6  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    23   5.6  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    23   5.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    23   5.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    22   9.7  

>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 79  CALTSKTSASATHCDNTLLDSSG 11
           C L S  SA+ T CD ++L   G
Sbjct: 48  CILMSAASATQTICDQSILHVHG 70


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 88  DDVCALTSKTSASATHCDNTLL 23
           DD      +TS S++HC N ++
Sbjct: 49  DDTSVSVVRTSDSSSHCQNEII 70


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 99  LHRRMTFVRSRAKPPPQRH 43
           LHR M  V + AK PP  H
Sbjct: 561 LHRDMATVNNYAKSPPSFH 579


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 3   VYLPDESSSVLSQCVAEA 56
           + LPD SSS   QC+ E+
Sbjct: 186 IKLPDRSSSFTLQCINES 203


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 15  DESSSVLSQCVAEAEVLLVSAQTSSSYEV 101
           D   S   +CV   E +LVSA TS+   V
Sbjct: 127 DPFQSTAIKCVERMESVLVSAHTSAGKTV 155


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 102 RLHRRMTFVRSRAKPPPQ 49
           R+ +RMT +RSR  PP +
Sbjct: 647 RMGQRMTEIRSRDTPPEE 664


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 120 PPPPDARLHRR 88
           PPPP  RLH R
Sbjct: 48  PPPPPTRLHDR 58


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 117 PPPDARLHRRMTFVRSRAKPPP 52
           PPP  RL R+    RS +  PP
Sbjct: 51  PPPTRRLPRKPLPFRSTSLQPP 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 559,161
Number of Sequences: 5004
Number of extensions: 6563
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)