Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24h19
         (125 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   1.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   3.1  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    19   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   5.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   7.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   7.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   7.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   7.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          18   9.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      18   9.6  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               18   9.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    18   9.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             18   9.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 90  RMTFVRSRAKPPPQRHTATTRCSTRRG 10
           R+  VRS +K PP      T    R+G
Sbjct: 184 RIPIVRSLSKSPPNDEGIETDSDRRKG 210


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 108 DARLHRRMTFVRSRAKPPPQRHTATT 31
           + R HR  +      + PPQ HT +T
Sbjct: 596 EKREHRSSSTKGITIQEPPQWHTRST 621


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 111 PDARLHRRMTFVRSRAKPPPQRHTATTRCSTRRGD 7
           P+    ++   VRS  K   +RH    R  T  GD
Sbjct: 88  PNGLTKKQEMLVRSAIKYWVERHKHIVRLVTAIGD 122


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 10   SPTSRAACCRSVSLRRR 60
            SP   A   +SVS RRR
Sbjct: 1753 SPPPAATSMKSVSSRRR 1769


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 10   SPTSRAACCRSVSLRRR 60
            SP   A   +SVS RRR
Sbjct: 1749 SPPPAATSMKSVSSRRR 1765


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/32 (28%), Positives = 11/32 (34%)
 Frame = -3

Query: 117 PPPDARLHRRMTFVRSRAKPPPQRHTATTRCS 22
           PP  A          +   P P  HT T  C+
Sbjct: 413 PPTGATTGPNEIVTCTNCGPNPCTHTTTNGCT 444


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/32 (28%), Positives = 11/32 (34%)
 Frame = -3

Query: 117 PPPDARLHRRMTFVRSRAKPPPQRHTATTRCS 22
           PP  A          +   P P  HT T  C+
Sbjct: 399 PPTGATTGPNEIVTCTNCGPNPCTHTTTNGCT 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/32 (28%), Positives = 11/32 (34%)
 Frame = -3

Query: 117 PPPDARLHRRMTFVRSRAKPPPQRHTATTRCS 22
           PP  A          +   P P  HT T  C+
Sbjct: 433 PPTGATTGPNEIVTCTNCGPNPCTHTTTNGCT 464


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/32 (28%), Positives = 11/32 (34%)
 Frame = -3

Query: 117 PPPDARLHRRMTFVRSRAKPPPQRHTATTRCS 22
           PP  A          +   P P  HT T  C+
Sbjct: 382 PPTGATTGPNEIVTCTNCGPNPCTHTTTNGCT 413


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 120  PPPPDARLH 94
            PPPP  R H
Sbjct: 1859 PPPPPPRNH 1867


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +1

Query: 100 SRVWGG 117
           SR+WGG
Sbjct: 634 SRIWGG 639


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +1

Query: 100 SRVWGG 117
           SR+WGG
Sbjct: 634 SRIWGG 639


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 80 LCAHEQNLRLSD 45
          LC  ++NL L D
Sbjct: 26 LCLKQENLNLDD 37


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 6   YLPDESSSVLSQCVAEAEVLLVSAQTSSSY 95
           +L  +SSS L+  +AEA  +  +A   + Y
Sbjct: 226 FLKPDSSSELATRLAEAVRIHFTASRDAFY 255


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 114 PPDARLHRRM-TFVRSRAKPPPQR 46
           PP  +LH    T  +++A+  PQ+
Sbjct: 809 PPHQQLHHHQSTHPQAQAQAQPQQ 832


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,271
Number of Sequences: 438
Number of extensions: 612
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 22
effective length of database: 136,707
effective search space used:  2597433
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)