Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24h14
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   3.1  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   5.5  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    24   5.5  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    23   7.3  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    23   9.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    23   9.6  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 72  IHTPPPSGVLTCTTINITKTW 10
           I+ PP + ++TC+T  +   W
Sbjct: 300 INNPPSNNIVTCSTDGLVHIW 320


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 61  GCMNNSAYL*VFLLQNCYENSKILIYLRDG 150
           GC+N   YL  +L+  C +NSKILI    G
Sbjct: 131 GCLNGR-YLSRYLML-CLQNSKILIVCETG 158


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 16  FCNIYCRTRKYARWWGCMNNSAYL*VFLLQNCYENSKILIYLRDGYYFH 162
           FC   C+  +Y    G ++    L  F+  + Y+N  +L       YFH
Sbjct: 128 FCIAICKCIEYLHSKGMVHGEIRLDSFIPISSYDNVYMLTVGSGASYFH 176


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 78  RIIHTPPPSGVLTCTTINITKTW 10
           +++ TP P+ + +   INI++ W
Sbjct: 323 QLVRTPSPASLSSSELINISRDW 345


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 66  TPPPSGVLTCTTINITKT 13
           TP P+G  + TT+N T+T
Sbjct: 727 TPKPNGTNSVTTLNRTQT 744


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 121 SKILIYLRDGYYFHLY 168
           S  +IYL D ++FH Y
Sbjct: 79  SDAVIYLEDQFHFHCY 94


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 71   IIRHIYRFFYYKTVTKTVKYL 133
            I+ +   F +YK + ++VKYL
Sbjct: 1085 ILNYASNFGHYKAIVQSVKYL 1105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,052
Number of Sequences: 5004
Number of extensions: 15736
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)