Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24h07
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   1.5  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    25   4.5  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.9  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    25   7.8  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 423 KCSIISGGRGTLLRIFNWDKLGW 355
           K S+I    GTLLR  NW  LG+
Sbjct: 206 KPSLIKATLGTLLRFLNWIPLGY 228


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 224 LDRYISFDNSRPSFLELTGIAAQRSPTCSGLNAGDYRNLAAL 349
           LDR+I FD  + SFL+  G       TCS L+   +R L  +
Sbjct: 249 LDRFIEFDKWQQSFLQDHGY--WNDYTCS-LHGASFRTLVGV 287


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 260 SFLELTGIAAQRSPTCSGLNAGDYRNLAALLNHPNLSQLKILNKVP 397
           +FL+  G+ A +      L+ G Y N A +    N  +  +LNK+P
Sbjct: 349 AFLKNEGVYASQYRDGIRLSLGLYNNAADISRLANTIKKGVLNKIP 394


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 176 GAYKMQLESLELAGCTLDRYISFDNSR 256
           G+ + QL+ L+    TLD  ISF+ S+
Sbjct: 85  GSLQAQLDDLKQKSKTLDENISFEKSK 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,575
Number of Sequences: 5004
Number of extensions: 36611
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)