Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24h07
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0902 + 24176326-24176706,24176785-24177017,24177121-241772... 29 1.9
06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606 29 1.9
12_01_0174 - 1301339-1301743,1301850-1302287 28 3.3
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 28 3.3
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 28 4.4
05_04_0189 - 18911654-18913207,18913310-18913528,18914034-189143... 28 4.4
03_05_0950 - 29090734-29091747 28 4.4
11_03_0062 - 9491389-9491678,9492868-9492968,9492974-9493079,949... 27 5.8
10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539 27 5.8
06_01_0155 + 1152607-1152721,1152781-1154129 27 5.8
06_01_0152 + 1136202-1136316,1136376-1137583 27 5.8
>12_02_0902 +
24176326-24176706,24176785-24177017,24177121-24177273,
24177392-24177425,24177536-24177685,24177772-24177906,
24177994-24178065
Length = 385
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 182 YKMQLESLELAGCTLDRYISFDNSRPSFLELTGIAA 289
YK+ ++L LA LDRY+S R + L+L G+ A
Sbjct: 165 YKLVADTLYLAVSYLDRYLSAHPLRRNRLQLLGVGA 200
>06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606
Length = 469
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 292 TESNMQWVKCWRLPQPCCSPEPS*LVPVENSQQSASATRDYGTLCSYAMPLFNG 453
T S++ WV+C P P C P+ L S S + + T C+ P NG
Sbjct: 150 TASDVTWVQCSPCPTPPCYPQKDVLYDPTKSSSSGVFSCNSPT-CTQLGPYANG 202
>12_01_0174 - 1301339-1301743,1301850-1302287
Length = 280
Score = 28.3 bits (60), Expect = 3.3
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +2
Query: 206 ELAGCTLDRYISFDNSRPSFLELTGIAA----QRSPTCSGLNAGDYRNLAALLNHPNLSQ 373
ELA CT D ++ D S S+ L AA R T +G + GD + ++ +
Sbjct: 197 ELAACTDDLCLTMDGSATSYQLLGNFAAGQKLYRLETATGAD-GDGDGVPTIIFSASSRL 255
Query: 374 LKILNKVPLPPEIMEHFAHMQC 439
+++ K+P +H A +QC
Sbjct: 256 VRV--KLPTLSATEQHLAALQC 275
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 136 CEQTDIC*EKVLRRCLQNAARIFGAG 213
C D+C +VLR CL+ AR+ G
Sbjct: 174 CHGNDLCLRRVLRACLEAGARLADPG 199
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 283 CSTTESNMQWVKCWRLPQPCCSPEPS*LVPVENSQQSASATRD 411
CS+T S ++ W L P SP P P E +++A A R+
Sbjct: 128 CSSTSSRIRKKFAW-LRSPSPSPSPRPPTPAELQREAAMAARE 169
>05_04_0189 -
18911654-18913207,18913310-18913528,18914034-18914367,
18914425-18914592,18914633-18914724,18914814-18914848,
18915377-18915441,18915565-18915669,18916373-18916434,
18916732-18916860,18918050-18918184,18918336-18918457,
18918808-18918965,18919215-18919372,18919447-18919780,
18919853-18919978,18920213-18920443,18920520-18920692
Length = 1399
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 288 AAMPVNSKKEGRELSKLMYRSSVQPASSKDSSC 190
AA+ +KEGREL +++ + P + D C
Sbjct: 385 AALKKEHEKEGRELVRVLLSAGADPTAQDDPHC 417
>03_05_0950 - 29090734-29091747
Length = 337
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 326 DYRNLAALLNHPNLSQLKILNKVPLPPEIMEHFAHMQCHCLMG 454
D + A + P ++ K L +VPLP E+ + + HCL+G
Sbjct: 220 DDKPRVAAASEPAAAEEK-LRRVPLPWELFQPVLRIVAHCLLG 261
>11_03_0062 -
9491389-9491678,9492868-9492968,9492974-9493079,
9493221-9493324,9494887-9495191
Length = 301
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 277 WHCSTTESNMQWVKCWRLPQPCCSPEPS*LVPVENSQQSA 396
+ C + W+ C R +PC S E + PVE + +SA
Sbjct: 81 YDCGKYSAERFWIGCGR--RPCLSCEQDNIPPVERNMRSA 118
>10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539
Length = 702
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 279 PVNSKKEGR--ELSKLMYRSSVQPASSKDSSCIL*APP 172
P +K GR E + L+YR P ++ C++ APP
Sbjct: 116 PCEDRKRGRRFERAMLVYRERHCPGKDEEIRCLIPAPP 153
>06_01_0155 + 1152607-1152721,1152781-1154129
Length = 487
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 292 TESNMQWVKCWRLPQPCCSPEPS*LVPVENSQQSAS 399
T ++ W++C P P C P+ + L S+ SA+
Sbjct: 168 TSIDLPWIQCAPCPMPECYPQQNALFDPRRSRTSAA 203
>06_01_0152 + 1136202-1136316,1136376-1137583
Length = 440
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 292 TESNMQWVKCWRLPQPCCSPEPS*LVPVENSQQSAS 399
T ++ W++C P P C P+ + L S+ SA+
Sbjct: 168 TSIDLPWIQCAPCPMPECYPQQNALFDPRRSRTSAA 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,351,708
Number of Sequences: 37544
Number of extensions: 254735
Number of successful extensions: 657
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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