Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24h07
(473 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC039257-1|AAH39257.1| 1391|Homo sapiens nucleoporin 155kDa prot... 89 1e-17
AJ007558-1|CAA07553.1| 1391|Homo sapiens nucleoporin 155 protein. 89 1e-17
AB018334-1|BAA34511.2| 1357|Homo sapiens KIAA0791 protein protein. 69 8e-12
AF165926-1|AAD52966.1| 1332|Homo sapiens NUP155 protein. 63 5e-10
BC150262-1|AAI50263.1| 1516|Homo sapiens RUN and SH3 domain cont... 29 8.2
BC146654-1|AAI46655.1| 1516|Homo sapiens RUSC2 protein protein. 29 8.2
BC132770-1|AAI32771.1| 1516|Homo sapiens RUN and SH3 domain cont... 29 8.2
BC132766-1|AAI32767.1| 1516|Homo sapiens RUN and SH3 domain cont... 29 8.2
BC064843-1|AAH64843.1| 1301|Homo sapiens RUSC2 protein protein. 29 8.2
AL133476-3|CAH70650.1| 1516|Homo sapiens RUN and SH3 domain cont... 29 8.2
AB002373-1|BAA20830.2| 1540|Homo sapiens KIAA0375 protein protein. 29 8.2
>BC039257-1|AAH39257.1| 1391|Homo sapiens nucleoporin 155kDa
protein.
Length = 1391
Score = 88.6 bits (210), Expect = 1e-17
Identities = 42/92 (45%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +2
Query: 197 ESLELAGCTLDRYISFDNSRPSFLELTGIAAQRSPTCSGLNAGDYRNLA-ALLNHPNLSQ 373
E+LE AG +DR + D P EL ++A +PT SG++ DY LL+ PNL +
Sbjct: 21 EALENAGRLIDRQLQEDRMYPDLSELLMVSAPNNPTVSGMSDMDYPLQGPGLLSVPNLPE 80
Query: 374 LKILNKVPLPPEIMEHFAHMQCHCLMGVFPEI 469
+ + +VPLPPE++E F HMQC+C+MGVFP I
Sbjct: 81 ISSIRRVPLPPELVEQFGHMQCNCMMGVFPPI 112
>AJ007558-1|CAA07553.1| 1391|Homo sapiens nucleoporin 155 protein.
Length = 1391
Score = 88.6 bits (210), Expect = 1e-17
Identities = 42/92 (45%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +2
Query: 197 ESLELAGCTLDRYISFDNSRPSFLELTGIAAQRSPTCSGLNAGDYRNLA-ALLNHPNLSQ 373
E+LE AG +DR + D P EL ++A +PT SG++ DY LL+ PNL +
Sbjct: 21 EALENAGRLIDRQLQEDRMYPDLSELLMVSAPNNPTVSGMSDMDYPLQGPGLLSVPNLPE 80
Query: 374 LKILNKVPLPPEIMEHFAHMQCHCLMGVFPEI 469
+ + +VPLPPE++E F HMQC+C+MGVFP I
Sbjct: 81 ISSIRRVPLPPELVEQFGHMQCNCMMGVFPPI 112
>AB018334-1|BAA34511.2| 1357|Homo sapiens KIAA0791 protein protein.
Length = 1357
Score = 68.9 bits (161), Expect = 8e-12
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Frame = +2
Query: 296 SPTCSGLNAGDYRNLA-ALLNHPNLSQLKILNKVPLPPEIMEHFAHMQCHCLMGVFPEI 469
+PT SG++ DY LL+ PNL ++ + +VPLPPE++E F HMQC+C+MGVFP I
Sbjct: 20 NPTVSGMSDMDYPLQGPGLLSVPNLPEISSIRRVPLPPELVEQFGHMQCNCMMGVFPPI 78
>AF165926-1|AAD52966.1| 1332|Homo sapiens NUP155 protein.
Length = 1332
Score = 62.9 bits (146), Expect = 5e-10
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +2
Query: 347 LLNHPNLSQLKILNKVPLPPEIMEHFAHMQCHCLMGVFPEI 469
LL+ PNL ++ + +VPLPPE++E F HMQC+C+MGVFP I
Sbjct: 13 LLSVPNLPEISSIRRVPLPPELVEQFGHMQCNCMMGVFPPI 53
>BC150262-1|AAI50263.1| 1516|Homo sapiens RUN and SH3 domain
containing 2 protein.
Length = 1516
Score = 29.1 bits (62), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 370 PVENSQQSASATRDYGTLCSYAMP 441
P++ +QQ A D GT CS+++P
Sbjct: 575 PIQEAQQDRGAPLDEGTCCSHSLP 598
>BC146654-1|AAI46655.1| 1516|Homo sapiens RUSC2 protein protein.
Length = 1516
Score = 29.1 bits (62), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 370 PVENSQQSASATRDYGTLCSYAMP 441
P++ +QQ A D GT CS+++P
Sbjct: 575 PIQEAQQDRGAPLDEGTCCSHSLP 598
>BC132770-1|AAI32771.1| 1516|Homo sapiens RUN and SH3 domain
containing 2 protein.
Length = 1516
Score = 29.1 bits (62), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 370 PVENSQQSASATRDYGTLCSYAMP 441
P++ +QQ A D GT CS+++P
Sbjct: 575 PIQEAQQDRGAPLDEGTCCSHSLP 598
>BC132766-1|AAI32767.1| 1516|Homo sapiens RUN and SH3 domain
containing 2 protein.
Length = 1516
Score = 29.1 bits (62), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 370 PVENSQQSASATRDYGTLCSYAMP 441
P++ +QQ A D GT CS+++P
Sbjct: 575 PIQEAQQDRGAPLDEGTCCSHSLP 598
>BC064843-1|AAH64843.1| 1301|Homo sapiens RUSC2 protein protein.
Length = 1301
Score = 29.1 bits (62), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 370 PVENSQQSASATRDYGTLCSYAMP 441
P++ +QQ A D GT CS+++P
Sbjct: 360 PIQEAQQDRGAPLDEGTCCSHSLP 383
>AL133476-3|CAH70650.1| 1516|Homo sapiens RUN and SH3 domain
containing 2 protein.
Length = 1516
Score = 29.1 bits (62), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 370 PVENSQQSASATRDYGTLCSYAMP 441
P++ +QQ A D GT CS+++P
Sbjct: 575 PIQEAQQDRGAPLDEGTCCSHSLP 598
>AB002373-1|BAA20830.2| 1540|Homo sapiens KIAA0375 protein protein.
Length = 1540
Score = 29.1 bits (62), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 370 PVENSQQSASATRDYGTLCSYAMP 441
P++ +QQ A D GT CS+++P
Sbjct: 599 PIQEAQQDRGAPLDEGTCCSHSLP 622
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,197,703
Number of Sequences: 237096
Number of extensions: 1384607
Number of successful extensions: 2589
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2587
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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