Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24h07
(473 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y17111-1|CAA76635.1| 1365|Drosophila melanogaster Nup154 protein. 83 1e-16
AF160944-1|AAD46884.1| 1365|Drosophila melanogaster Nup154 protein. 83 1e-16
AF051398-1|AAC05386.1| 1365|Drosophila melanogaster nucleoporin ... 83 1e-16
AF051397-1|AAC05385.1| 1349|Drosophila melanogaster nucleoporin ... 83 1e-16
AF051396-2|AAC06248.1| 1349|Drosophila melanogaster nucleoporin ... 83 1e-16
AF051396-1|AAC06247.1| 1365|Drosophila melanogaster nucleoporin ... 83 1e-16
AE014134-2011|AAF53051.1| 1365|Drosophila melanogaster CG4579-PA... 83 1e-16
BT001640-1|AAN71395.1| 475|Drosophila melanogaster RE40923p pro... 28 7.4
AE014296-2218|AAN11841.1| 475|Drosophila melanogaster CG32115-P... 28 7.4
AY069775-1|AAL39920.1| 2171|Drosophila melanogaster SD01562p pro... 27 9.8
AY051993-1|AAK93417.1| 526|Drosophila melanogaster LD46058p pro... 27 9.8
AE014296-282|AAN11489.1| 526|Drosophila melanogaster CG1049-PD,... 27 9.8
AE014296-281|AAG22223.1| 526|Drosophila melanogaster CG1049-PC,... 27 9.8
AE014296-280|AAF47508.2| 526|Drosophila melanogaster CG1049-PB,... 27 9.8
AE014296-279|AAF47509.2| 526|Drosophila melanogaster CG1049-PA,... 27 9.8
AE013599-2783|AAF57626.1| 2599|Drosophila melanogaster CG15099-P... 27 9.8
>Y17111-1|CAA76635.1| 1365|Drosophila melanogaster Nup154 protein.
Length = 1365
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Frame = +2
Query: 191 QLESLELAGCTLDRYISFDNSRPSFLELTGIAAQRSPTCSGLNAGDYRNLAALLNHP--N 364
QL+ A L+ + + + ++P LELTG++ T SGLN DY++L+ L + N
Sbjct: 7 QLDFFTTATSMLEWHYNLERNKPGLLELTGVSQHGRATMSGLNDYDYQSLSFLKSDRTHN 66
Query: 365 LSQLKILNKVPLPPEIMEHFAHMQCHCLMGVFPEI 469
L Q++ + K +P EI+EHF H++CHC MG+FPEI
Sbjct: 67 LQQMRTVTKSAIPNEILEHFKHIKCHCTMGLFPEI 101
>AF160944-1|AAD46884.1| 1365|Drosophila melanogaster Nup154 protein.
Length = 1365
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Frame = +2
Query: 191 QLESLELAGCTLDRYISFDNSRPSFLELTGIAAQRSPTCSGLNAGDYRNLAALLNHP--N 364
QL+ A L+ + + + ++P LELTG++ T SGLN DY++L+ L + N
Sbjct: 7 QLDFFTTATSMLEWHYNLERNKPGLLELTGVSQHGRATMSGLNDYDYQSLSFLKSDRTHN 66
Query: 365 LSQLKILNKVPLPPEIMEHFAHMQCHCLMGVFPEI 469
L Q++ + K +P EI+EHF H++CHC MG+FPEI
Sbjct: 67 LQQMRTVTKSAIPNEILEHFKHIKCHCTMGLFPEI 101
>AF051398-1|AAC05386.1| 1365|Drosophila melanogaster nucleoporin
protein.
Length = 1365
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Frame = +2
Query: 191 QLESLELAGCTLDRYISFDNSRPSFLELTGIAAQRSPTCSGLNAGDYRNLAALLNHP--N 364
QL+ A L+ + + + ++P LELTG++ T SGLN DY++L+ L + N
Sbjct: 7 QLDFFTTATSMLEWHYNLERNKPGLLELTGVSQHGRATMSGLNDYDYQSLSFLKSDRTHN 66
Query: 365 LSQLKILNKVPLPPEIMEHFAHMQCHCLMGVFPEI 469
L Q++ + K +P EI+EHF H++CHC MG+FPEI
Sbjct: 67 LQQMRTVTKSAIPNEILEHFKHIKCHCTMGLFPEI 101
>AF051397-1|AAC05385.1| 1349|Drosophila melanogaster nucleoporin
protein.
Length = 1349
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Frame = +2
Query: 191 QLESLELAGCTLDRYISFDNSRPSFLELTGIAAQRSPTCSGLNAGDYRNLAALLNHP--N 364
QL+ A L+ + + + ++P LELTG++ T SGLN DY++L+ L + N
Sbjct: 7 QLDFFTTATSMLEWHYNLERNKPGLLELTGVSQHGRATMSGLNDYDYQSLSFLKSDRTHN 66
Query: 365 LSQLKILNKVPLPPEIMEHFAHMQCHCLMGVFPEI 469
L Q++ + K +P EI+EHF H++CHC MG+FPEI
Sbjct: 67 LQQMRTVTKSAIPNEILEHFKHIKCHCTMGLFPEI 101
>AF051396-2|AAC06248.1| 1349|Drosophila melanogaster nucleoporin
protein.
Length = 1349
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Frame = +2
Query: 191 QLESLELAGCTLDRYISFDNSRPSFLELTGIAAQRSPTCSGLNAGDYRNLAALLNHP--N 364
QL+ A L+ + + + ++P LELTG++ T SGLN DY++L+ L + N
Sbjct: 7 QLDFFTTATSMLEWHYNLERNKPGLLELTGVSQHGRATMSGLNDYDYQSLSFLKSDRTHN 66
Query: 365 LSQLKILNKVPLPPEIMEHFAHMQCHCLMGVFPEI 469
L Q++ + K +P EI+EHF H++CHC MG+FPEI
Sbjct: 67 LQQMRTVTKSAIPNEILEHFKHIKCHCTMGLFPEI 101
>AF051396-1|AAC06247.1| 1365|Drosophila melanogaster nucleoporin
protein.
Length = 1365
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Frame = +2
Query: 191 QLESLELAGCTLDRYISFDNSRPSFLELTGIAAQRSPTCSGLNAGDYRNLAALLNHP--N 364
QL+ A L+ + + + ++P LELTG++ T SGLN DY++L+ L + N
Sbjct: 7 QLDFFTTATSMLEWHYNLERNKPGLLELTGVSQHGRATMSGLNDYDYQSLSFLKSDRTHN 66
Query: 365 LSQLKILNKVPLPPEIMEHFAHMQCHCLMGVFPEI 469
L Q++ + K +P EI+EHF H++CHC MG+FPEI
Sbjct: 67 LQQMRTVTKSAIPNEILEHFKHIKCHCTMGLFPEI 101
>AE014134-2011|AAF53051.1| 1365|Drosophila melanogaster CG4579-PA,
isoform A protein.
Length = 1365
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Frame = +2
Query: 191 QLESLELAGCTLDRYISFDNSRPSFLELTGIAAQRSPTCSGLNAGDYRNLAALLNHP--N 364
QL+ A L+ + + + ++P LELTG++ T SGLN DY++L+ L + N
Sbjct: 7 QLDFFTTATSMLEWHYNLERNKPGLLELTGVSQHGRATMSGLNDYDYQSLSFLKSDRTHN 66
Query: 365 LSQLKILNKVPLPPEIMEHFAHMQCHCLMGVFPEI 469
L Q++ + K +P EI+EHF H++CHC MG+FPEI
Sbjct: 67 LQQMRTVTKSAIPNEILEHFKHIKCHCTMGLFPEI 101
>BT001640-1|AAN71395.1| 475|Drosophila melanogaster RE40923p
protein.
Length = 475
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 311 GLNAGDY--RNLAALLNHPNLSQLKILNKVPLPPEIMEHFAHMQC 439
GL G Y ++++ + HPNL +L LNK + + QC
Sbjct: 332 GLECGFYDPKSVSHFVQHPNLKRLSTLNKASIITDDYAALLEKQC 376
>AE014296-2218|AAN11841.1| 475|Drosophila melanogaster CG32115-PA
protein.
Length = 475
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 311 GLNAGDY--RNLAALLNHPNLSQLKILNKVPLPPEIMEHFAHMQC 439
GL G Y ++++ + HPNL +L LNK + + QC
Sbjct: 332 GLECGFYDPKSVSHFVQHPNLKRLSTLNKASIITDDYAALLEKQC 376
>AY069775-1|AAL39920.1| 2171|Drosophila melanogaster SD01562p protein.
Length = 2171
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -3
Query: 294 RCAAMPVNSKKEGRELSKLMYRSSVQPASSKDSSCI 187
RC MP KKE REL + R V SS SC+
Sbjct: 1683 RCPQMPFQDKKEVRELHDVTSR-LVDSLSSVAGSCL 1717
>AY051993-1|AAK93417.1| 526|Drosophila melanogaster LD46058p
protein.
Length = 526
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 313 VKCWRLPQPCCSPEPS*LVPVENSQQSASATRDYGTLCSYA 435
VK +PQ SP +VP SQQ S D+ T+C A
Sbjct: 132 VKRKYVPQQQASPNHR-VVPASTSQQFFSGASDFATICKPA 171
>AE014296-282|AAN11489.1| 526|Drosophila melanogaster CG1049-PD,
isoform D protein.
Length = 526
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 313 VKCWRLPQPCCSPEPS*LVPVENSQQSASATRDYGTLCSYA 435
VK +PQ SP +VP SQQ S D+ T+C A
Sbjct: 132 VKRKYVPQQQASPNHR-VVPASTSQQFFSGASDFATICKPA 171
>AE014296-281|AAG22223.1| 526|Drosophila melanogaster CG1049-PC,
isoform C protein.
Length = 526
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 313 VKCWRLPQPCCSPEPS*LVPVENSQQSASATRDYGTLCSYA 435
VK +PQ SP +VP SQQ S D+ T+C A
Sbjct: 132 VKRKYVPQQQASPNHR-VVPASTSQQFFSGASDFATICKPA 171
>AE014296-280|AAF47508.2| 526|Drosophila melanogaster CG1049-PB,
isoform B protein.
Length = 526
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 313 VKCWRLPQPCCSPEPS*LVPVENSQQSASATRDYGTLCSYA 435
VK +PQ SP +VP SQQ S D+ T+C A
Sbjct: 132 VKRKYVPQQQASPNHR-VVPASTSQQFFSGASDFATICKPA 171
>AE014296-279|AAF47509.2| 526|Drosophila melanogaster CG1049-PA,
isoform A protein.
Length = 526
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 313 VKCWRLPQPCCSPEPS*LVPVENSQQSASATRDYGTLCSYA 435
VK +PQ SP +VP SQQ S D+ T+C A
Sbjct: 132 VKRKYVPQQQASPNHR-VVPASTSQQFFSGASDFATICKPA 171
>AE013599-2783|AAF57626.1| 2599|Drosophila melanogaster CG15099-PA
protein.
Length = 2599
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -3
Query: 294 RCAAMPVNSKKEGRELSKLMYRSSVQPASSKDSSCI 187
RC MP KKE REL + R V SS SC+
Sbjct: 2111 RCPQMPFQDKKEVRELHDVTSR-LVDSLSSVAGSCL 2145
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,841,940
Number of Sequences: 53049
Number of extensions: 431480
Number of successful extensions: 953
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1622204766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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