Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24h07
(473 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U20862-5|AAK29861.1| 483|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 28 3.0
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 28 3.9
Z46996-2|CAA87102.1| 679|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z49074-2|CAE48829.1| 807|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z49074-1|CAA88893.3| 771|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z49073-9|CAE48845.1| 807|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z49073-8|CAA88892.3| 771|Caenorhabditis elegans Hypothetical pr... 27 6.9
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 27 6.9
AF038611-5|AAT27250.1| 760|Caenorhabditis elegans Homolog of el... 27 6.9
AF038611-4|AAB92042.3| 833|Caenorhabditis elegans Homolog of el... 27 6.9
Z54342-1|CAA91143.1| 505|Caenorhabditis elegans Hypothetical pr... 27 9.1
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 27 9.1
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 27 9.1
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 27 9.1
>U20862-5|AAK29861.1| 483|Caenorhabditis elegans Hypothetical
protein W06E11.1 protein.
Length = 483
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +2
Query: 134 SANKQIYVRKRFYGGAYKMQLESLELAGCTLDRYISFDNSRPSFLELTGIAAQRSPTCSG 313
S+ + + KRF YK + LE+ T + S+D + + + G ++
Sbjct: 61 SSKRDAWDAKRFPIARYKKNVRLLEMRFMTDTQLGSYDKKKAELMYMDGDVPKKGHGIDA 120
Query: 314 LNAGD--YRNLAALLNHP 361
L A D Y A + +HP
Sbjct: 121 LRANDEIYEGRAFIHDHP 138
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +1
Query: 268 GVNWHCSTTESNMQWVKCW-----RLPQPCCSPEPS*LVPVE 378
G N HC + + +++ C RLP C P+P+ LVPVE
Sbjct: 835 GANRHCQFSTNLERYICCGLESDVRLPN-VCPPQPANLVPVE 875
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 137 ANKQIYVRKRFYGGAYKMQLESLEL-AGCT 223
ANK YV++ YGGA+ L+ + AGC+
Sbjct: 377 ANKMAYVKREGYGGAFVWTLDFDDFNAGCS 406
>Z46996-2|CAA87102.1| 679|Caenorhabditis elegans Hypothetical
protein C34C12.2 protein.
Length = 679
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = -3
Query: 288 AAMPVNSKKEGR----ELSKLMYRSSVQPASSKDS 196
+A P NSKK ++S +YRS V+P SS S
Sbjct: 538 SAPPENSKKSDHFDMPDISSTLYRSRVEPISSSSS 572
>Z49074-2|CAE48829.1| 807|Caenorhabditis elegans Hypothetical
protein ZK970.1b protein.
Length = 807
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 270 SKKEGRELSKLMYRSSVQPASSKDSSCIL*APP*NLFLTYICLF 139
S +EG++ S + R + QP+SS+ I + L LT + +F
Sbjct: 41 SLEEGKQASSSLLRDTGQPSSSRSKEAISSSSKGCLLLTVLVIF 84
>Z49074-1|CAA88893.3| 771|Caenorhabditis elegans Hypothetical
protein ZK970.1a protein.
Length = 771
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 270 SKKEGRELSKLMYRSSVQPASSKDSSCIL*APP*NLFLTYICLF 139
S +EG++ S + R + QP+SS+ I + L LT + +F
Sbjct: 5 SLEEGKQASSSLLRDTGQPSSSRSKEAISSSSKGCLLLTVLVIF 48
>Z49073-9|CAE48845.1| 807|Caenorhabditis elegans Hypothetical
protein ZK970.1b protein.
Length = 807
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 270 SKKEGRELSKLMYRSSVQPASSKDSSCIL*APP*NLFLTYICLF 139
S +EG++ S + R + QP+SS+ I + L LT + +F
Sbjct: 41 SLEEGKQASSSLLRDTGQPSSSRSKEAISSSSKGCLLLTVLVIF 84
>Z49073-8|CAA88892.3| 771|Caenorhabditis elegans Hypothetical
protein ZK970.1a protein.
Length = 771
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 270 SKKEGRELSKLMYRSSVQPASSKDSSCIL*APP*NLFLTYICLF 139
S +EG++ S + R + QP+SS+ I + L LT + +F
Sbjct: 5 SLEEGKQASSSLLRDTGQPSSSRSKEAISSSSKGCLLLTVLVIF 48
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/70 (24%), Positives = 27/70 (38%)
Frame = -1
Query: 344 QQGCGNRQHLTHCMLDSVVLQCQLTPKRKGANYQS*CTGQAYSQPAPKILAAFCRHLRRT 165
QQ C +Q+ + ++CQ ++ Q C Q Y AP+ C+ + T
Sbjct: 304 QQQCIKQQYPVQQCIQPCTVECQTACQQAVPQCQQQCAPQCYQPSAPQ-----CQQCQNT 358
Query: 164 FS*HISVCSQ 135
VC Q
Sbjct: 359 CQQFAPVCQQ 368
>AF038611-5|AAT27250.1| 760|Caenorhabditis elegans Homolog of elac2
(cancer susceptibilitylocus) protein 1, isoform b
protein.
Length = 760
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 314 LNAGDYRNLAALLNHPNLSQLKILNKVPLPPEIMEHFAH 430
+N YR+L LN+P+++ L I P+ P + + H
Sbjct: 286 INTPTYRHLMEKLNNPSITHLLINGGNPVIPAVESVYKH 324
>AF038611-4|AAB92042.3| 833|Caenorhabditis elegans Homolog of elac2
(cancer susceptibilitylocus) protein 1, isoform a
protein.
Length = 833
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 314 LNAGDYRNLAALLNHPNLSQLKILNKVPLPPEIMEHFAH 430
+N YR+L LN+P+++ L I P+ P + + H
Sbjct: 359 INTPTYRHLMEKLNNPSITHLLINGGNPVIPAVESVYKH 397
>Z54342-1|CAA91143.1| 505|Caenorhabditis elegans Hypothetical
protein C08H9.1 protein.
Length = 505
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 86 FNSVY*LNFC*KNHS*SANKQIYVRKRFYGGAYKMQLESL 205
FNSV ++F + HS N ++ YGG Y L +L
Sbjct: 147 FNSV--IDFFQRKHSSYVNHDFFIAAESYGGVYGPMLSAL 184
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +2
Query: 170 YGGAYKMQLESLELAGCTLDRYISFDNSRPSFLELT----GIAAQRSPTCSGLNAGDYRN 337
Y G ++ + L+ G T I+ DN +EL I + C+ + G YR
Sbjct: 91 YDGDRRLNVNCLDSMGRTALE-IAVDNENMEVVELLLQQPDIRIGNALLCA-IREGVYRL 148
Query: 338 LAALLNHPNLSQ 373
+ L+NHPN+++
Sbjct: 149 VEVLVNHPNITR 160
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +2
Query: 170 YGGAYKMQLESLELAGCTLDRYISFDNSRPSFLELT----GIAAQRSPTCSGLNAGDYRN 337
Y G ++ + L+ G T I+ DN +EL I + C+ + G YR
Sbjct: 71 YDGDRRLNVNCLDSMGRTALE-IAVDNENMEVVELLLQQPDIRIGNALLCA-IREGVYRL 128
Query: 338 LAALLNHPNLSQ 373
+ L+NHPN+++
Sbjct: 129 VEVLVNHPNITR 140
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +2
Query: 170 YGGAYKMQLESLELAGCTLDRYISFDNSRPSFLELT----GIAAQRSPTCSGLNAGDYRN 337
Y G ++ + L+ G T I+ DN +EL I + C+ + G YR
Sbjct: 71 YDGDRRLNVNCLDSMGRTALE-IAVDNENMEVVELLLQQPDIRIGNALLCA-IREGVYRL 128
Query: 338 LAALLNHPNLSQ 373
+ L+NHPN+++
Sbjct: 129 VEVLVNHPNITR 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,121
Number of Sequences: 27780
Number of extensions: 215110
Number of successful extensions: 498
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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