Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24h05
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 28 0.60
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 0.80
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 1.4
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 1.4
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 27 1.4
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 1.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 2.4
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 25 3.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 3.2
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 5.6
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 25 5.6
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch... 25 5.6
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 24 7.4
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 24 7.4
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 24 7.4
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 24 9.8
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 24 9.8
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M... 24 9.8
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T... 24 9.8
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 27.9 bits (59), Expect = 0.60
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = -2
Query: 281 MLKNWPKLLLARFMVPKSENQNPQGLPCTLGPMVYVVLPLAGSN 150
+LK P LLA+ ++ K E++N P + P +Y+++ +A S+
Sbjct: 549 LLKMVPMELLAKILLEKLESKN----PILIEPSIYILVHIAASD 588
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 0.80
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 197 TLGPMVYVVLPLAGSNTTIFLSGSGY 120
T+ V VVLP AG+NT +SGS +
Sbjct: 290 TVSGTVEVVLPTAGTNTMTVVSGSRF 315
Score = 27.5 bits (58), Expect = 0.80
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 197 TLGPMVYVVLPLAGSNTTIFLSGSGY 120
T+ V VVLP AG+NT +SGS +
Sbjct: 430 TVSGTVEVVLPTAGTNTMTVVSGSRF 455
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 1.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 152 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 63
NT ++ +G G ++ +H +LFK R F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 182 VYVVLPLAGSNTTIFLSGSGYNLSS 108
V VV+P AG TT SGS Y +S+
Sbjct: 173 VEVVIPTAGYITTTLTSGSSYPVST 197
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 182 VYVVLPLAGSNTTIFLSGSGYNLSS 108
V VV+P AG+ TT SGS Y +++
Sbjct: 130 VEVVIPTAGTFTTTLTSGSSYPVAT 154
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 204 QALRILVFRLWNHKTCQKQLWP 269
Q L IL+ +LWNHK + + P
Sbjct: 219 QRLAILIRKLWNHKAFKSHVSP 240
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 2.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 119 NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEK 18
N + C+ + +NSFFKNL S +SI K
Sbjct: 1202 NTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAK 1235
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 3.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 385 ECTRLVPFSKENRFASVFAKCCQIYCCVXECLRIE 281
ECT V + N FA ++YC + + LR++
Sbjct: 283 ECTAYVSTNSSNAKNVTFATIFKLYCSLRQGLRVK 317
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 3.2
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -2
Query: 224 NQNPQGLPCTLGPMVYVVLPLAGSNTTIFL--SGSGYNLSSHSCKLFKLASRQNS--FFK 57
N + G P +L + PLA S T+ L S S NL LF+ + +N+ +F
Sbjct: 203 NNSSSGFPSSLNGIPIASPPLATSPTSFSLASSASSTNLGGSKGLLFQQMTSENNRDYFS 262
Query: 56 NLPS 45
P+
Sbjct: 263 RRPT 266
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 24.6 bits (51), Expect = 5.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 135 IGLGIQLVFPFVQTIQISQSTKFVF 61
+G+GI + P + T I T FVF
Sbjct: 1223 LGIGIATISPSIGTASIISGTAFVF 1247
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 24.6 bits (51), Expect = 5.6
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 25 ILNCSCFEGRFLKNEFCR--LANLNSLHEWEDKLYPEPDKNIVVLEPANGK 171
+++CS E + + FCR L H + E D I++L+ A K
Sbjct: 170 VISCSTIENKIMAISFCRKVLGQTGDGHFSPVGGFSESDNKILILDVARFK 220
>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 24.6 bits (51), Expect = 5.6
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 359 KGKSLCKCLCKMLP-NILLCLXMSPY*MLKNWPKLLLARFMVPKSENQ 219
KG S C+ ++ P ++ +C+ ++PY + K A F++ + E+Q
Sbjct: 136 KGFSFEPCIPELGPISMAICMDINPYDFKAPFEKFEYANFILRELEHQ 183
>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 205
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 263 KLLLARFMVPKSENQNPQ 210
K++LA + K ENQNPQ
Sbjct: 135 KIILADIDMSKPENQNPQ 152
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 211 CGFWFSDFGTIKRAKSNFGQFFSIQYGDI 297
CG+ +SDF I + S F ++ Y I
Sbjct: 1285 CGYEYSDFTIILQFSSQLRDFINLYYEGI 1313
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 24.2 bits (50), Expect = 7.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 249 CQKQLWPVF*HSIRRHSQTQQYIWQHFAKTLAKRFSFENGTKRVHS 386
C ++ VF ++R + F KTL K+F+F+ ++HS
Sbjct: 50 CSEKTQQVF-DDLKRTEKKFHTSLNRFGKTLEKKFNFDLEDIKLHS 94
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 165 VGRLQHHDIFIGLG 124
VGR +HH I +G+G
Sbjct: 35 VGRPRHHGIMVGMG 48
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 104 NGKTSCIPSPIKIS 145
NGK+SCIP I +S
Sbjct: 75 NGKSSCIPVNINVS 88
>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 76 RLANLNSLHEWEDKLYPEPDKN 141
R L ++W K YP+P K+
Sbjct: 136 RWVTLGEQYDWTTKEYPDPSKS 157
>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -1
Query: 387 MNAHVWFHFQRKIALQVSLQNVAKYI 310
+NAH+ FH ++A+ S + +Y+
Sbjct: 57 LNAHLAFHHDNRVAVLASHSDKVEYL 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,494
Number of Sequences: 5004
Number of extensions: 39670
Number of successful extensions: 153
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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