Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24h05
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587... 29 1.0
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 29 1.4
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 29 1.8
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 28 3.1
10_08_0910 - 21495633-21495923,21496155-21496430,21496754-214969... 27 5.5
12_02_0878 + 23952594-23952802,23954846-23955083,23955122-239552... 27 7.2
03_03_0129 - 14684003-14684123,14684205-14684323,14684406-146845... 26 9.6
01_05_0707 - 24468329-24468448,24468794-24468940,24469050-244691... 26 9.6
>03_05_0429 -
24157060-24157671,24158000-24158468,24158679-24158752,
24159231-24159280,24159368-24159449,24159526-24159575,
24159666-24159708,24159804-24159884,24159988-24160033,
24160151-24160197,24160358-24160423,24160701-24160767,
24160913-24160998
Length = 590
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 262 FGQFFSIQYGDIXKHNNIFGNILQRHLQS 348
F FFS+Q ++ KH ++ +LQ HL+S
Sbjct: 232 FASFFSLQAAELLKHPHLQPYVLQVHLKS 260
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 29.1 bits (62), Expect = 1.4
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Frame = +1
Query: 49 GRFLKNEFCRLANLNSLHEWEDKLYPEPD--KNIVVLEPANG---KTTYTIGPRVQGKP- 210
GR L + + L W LY D + +LE A G K ++IGP +Q KP
Sbjct: 342 GRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKPL 401
Query: 211 ---CGFWFSDFGTIK-RAKSNFGQFFSI 282
C F ++ + K R ++ G++ I
Sbjct: 402 YSFCVNLFHEYISTKVRDMASHGEYLPI 429
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -3
Query: 391 ANECTRLVPFSKENRFASVFAKCCQIYCCVXECLRIEC*KTGQSCFWHVLWFQSRKTKIR 212
AN T++VP ++ R +S F+ C++ +CFW V W RK ++
Sbjct: 87 ANALTKVVPILQK-RLSSSFSDRCRMAVSAGVIW-------SSACFWKVAW---RKLQLT 135
Query: 211 RACPALLDRW 182
+ PA RW
Sbjct: 136 TSPPATPSRW 145
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 27.9 bits (59), Expect = 3.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 31 NCSCFEGRFLKNEFC 75
+CSC+ G ++KN FC
Sbjct: 83 DCSCYPGSYMKNGFC 97
>10_08_0910 -
21495633-21495923,21496155-21496430,21496754-21496999,
21497187-21497296,21498228-21498387
Length = 360
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 127 EPDKNIVVLEPANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKSNFGQFFSIQYG 291
E + NIV+++ ANG G V+ K F + + A ++G F + +G
Sbjct: 41 EIEANIVIIDNANGGEALPPGDLVKKKNPDFSEEEIAKLGSACEDWGYFHLVNHG 95
>12_02_0878 +
23952594-23952802,23954846-23955083,23955122-23955238,
23955719-23955818,23956168-23956196,23956477-23956704
Length = 306
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 316 FGNILQRHLQSDFPLKMEPNVCIHLPD 396
FG ++ L+++ LK+EP + + L D
Sbjct: 260 FGQVVSEDLENEIKLKIEPELAVELYD 286
>03_03_0129 -
14684003-14684123,14684205-14684323,14684406-14684501,
14684605-14684712,14684974-14685060,14685135-14685338,
14685429-14685488,14686096-14686264,14686400-14686473,
14686586-14686897,14687054-14687212
Length = 502
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 297 NVSVLNAKKLAKVAFGTFYGSKVGKPKSAGLALHSWTDGVRSLAVGRLQH 148
N S + ++A G +K+G+P +A LA + SLAV H
Sbjct: 44 NCSNIGVAQIATAEVGAIPNAKLGQPSAAALAEQALLGSDASLAVHAGNH 93
>01_05_0707 -
24468329-24468448,24468794-24468940,24469050-24469103,
24469185-24469300,24470537-24470583,24470686-24470723,
24471050-24471268,24471504-24471602,24471675-24471728,
24472907-24473148,24474258-24474447
Length = 441
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +1
Query: 55 FLKNEFCRLANLNSLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKPCGFW 222
++K FC+ A+ H D+ P+P N E + T + R C F+
Sbjct: 355 YMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFY 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,432,036
Number of Sequences: 37544
Number of extensions: 255533
Number of successful extensions: 772
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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