Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24h05
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z82053-9|CAJ85768.1|  189|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z82053-8|CAB61018.2|  309|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z81089-4|CAB03138.3|  425|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    27   4.9  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      27   4.9  
AF070968-1|AAD15926.1|  309|Caenorhabditis elegans PAR-6 protein.      27   4.9  
U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop hel...    27   6.4  
L16621-10|AAA28227.1|  507|Caenorhabditis elegans Temporarily as...    27   6.4  
L16621-9|AAL11487.1|  568|Caenorhabditis elegans Temporarily ass...    27   6.4  
AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    27   6.4  
AF000261-1|AAB52922.1|  505|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z81558-2|CAB04540.2|  144|Caenorhabditis elegans Hypothetical pr...    26   8.5  
L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline acetylt...    26   8.5  
L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline acetylt...    26   8.5  
AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal chol...    26   8.5  

>Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical
           protein H21P03.3b protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 130 PDKNIVVLEPANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKSNFG 267
           PD+N+ V    N   T  IGP+++  P      D G  ++A+++ G
Sbjct: 25  PDQNVDVKVQENNVVTTKIGPKLETIPAAKMQDDNGDEEKAENSEG 70


>Z82053-9|CAJ85768.1|  189|Caenorhabditis elegans Hypothetical
           protein T26E3.3b protein.
          Length = 189

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 94  SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKP 210
           +L +  D +       I+ ++PAN + T + GP  QG P
Sbjct: 106 TLDQVTDMMVANAHNLIITVKPANQRNTLSRGPSQQGTP 144


>Z82053-8|CAB61018.2|  309|Caenorhabditis elegans Hypothetical
           protein T26E3.3a protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 94  SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKP 210
           +L +  D +       I+ ++PAN + T + GP  QG P
Sbjct: 226 TLDQVTDMMVANAHNLIITVKPANQRNTLSRGPSQQGTP 264


>Z81089-4|CAB03138.3|  425|Caenorhabditis elegans Hypothetical
           protein F53H4.5 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 269 WPKLLLARFMVPKSENQNPQGLPCTLGPM 183
           +P    + F VPK E Q P+G P TLG +
Sbjct: 114 FPNASTSLFTVPKKETQMPEGQP-TLGTL 141


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 228  RLWNHKTCQKQLWPVF*HSIRRHSQTQQYIWQHFAKTLAKRFSF 359
            RL+N K     LW  +  S   H + +  I QH   T+  + +F
Sbjct: 1958 RLFNSKFQDDNLWHCYSKSSLNHEKMESRILQHIEHTVLSKSNF 2001


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 228  RLWNHKTCQKQLWPVF*HSIRRHSQTQQYIWQHFAKTLAKRFSF 359
            RL+N K     LW  +  S   H + +  I QH   T+  + +F
Sbjct: 1958 RLFNSKFQDDNLWHCYSKSSLNHEKMESRILQHIEHTVLSKSNF 2001


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 228  RLWNHKTCQKQLWPVF*HSIRRHSQTQQYIWQHFAKTLAKRFSF 359
            RL+N K     LW  +  S   H + +  I QH   T+  + +F
Sbjct: 1958 RLFNSKFQDDNLWHCYSKSSLNHEKMESRILQHIEHTVLSKSNF 2001


>AF070968-1|AAD15926.1|  309|Caenorhabditis elegans PAR-6 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 94  SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKP 210
           +L +  D +       I+ ++PAN + T + GP  QG P
Sbjct: 226 TLDQVTDMMVANAHNLIITVKPANQRNTLSRGPSQQGTP 264


>U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop helix
           protein 14 protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 116 LSSHSCKLFKLASRQNSF 63
           L+SHSCK+F++ +   SF
Sbjct: 11  LNSHSCKIFQICTSSQSF 28


>L16621-10|AAA28227.1|  507|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 282, isoform a protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 351 IALQVSLQNVAKYIVVFXNVSVLNAKKLAKVAFGTFYG 238
           ++ Q +L + A  +  F N  +  A+K A +AFG  YG
Sbjct: 137 LSSQQALADFALSVQFFKNEKIKGAQKSAVIAFGGSYG 174


>L16621-9|AAL11487.1|  568|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 282, isoform b protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 351 IALQVSLQNVAKYIVVFXNVSVLNAKKLAKVAFGTFYG 238
           ++ Q +L + A  +  F N  +  A+K A +AFG  YG
Sbjct: 198 LSSQQALADFALSVQFFKNEKIKGAQKSAVIAFGGSYG 235


>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 355 ENRFASVFAKCCQIYCC 305
           ENR A+VF + C IY C
Sbjct: 215 ENRMANVFCEQCDIYYC 231


>AF000261-1|AAB52922.1|  505|Caenorhabditis elegans Hypothetical
           protein F19B10.11 protein.
          Length = 505

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 170 LPLAGSNTTIFL-SGSGYNLSSHSCKLFKLASRQNSFFKNLPS 45
           +P A ++  +++ SG+G   SSHS  L++  + QN  F   P+
Sbjct: 236 VPKATNSKVVYVRSGAGTTPSSHSAALYQYPATQNPEFPPGPA 278


>Z81558-2|CAB04540.2|  144|Caenorhabditis elegans Hypothetical
           protein F59D12.2 protein.
          Length = 144

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -2

Query: 200 CTLGPMVYVVLPLAGSNTTIFLSGSGYNLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIE 21
           C L   +  +L L   +T +      YN + +SC  F L     SFFK + S Q   + +
Sbjct: 88  CVLMSTIISLLLLVLLSTALLYFMCSYNQNCNSCTKFSLP----SFFKRVTSTQSPVTAQ 143

Query: 20  K 18
           K
Sbjct: 144 K 144


>L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 128 SGYNLSSHSCKLFKLA-SRQNSFFKNLPS 45
           SGY + +H C LF LA  R+ +  +++PS
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPS 540


>L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 128 SGYNLSSHSCKLFKLA-SRQNSFFKNLPS 45
           SGY + +H C LF LA  R+ +  +++PS
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPS 540


>AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal choline
           acetyltransferaseprotein 1, isoform b protein.
          Length = 627

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 128 SGYNLSSHSCKLFKLA-SRQNSFFKNLPS 45
           SGY + +H C LF LA  R+ +  +++PS
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPS 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,103,856
Number of Sequences: 27780
Number of extensions: 232018
Number of successful extensions: 721
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)