Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24h05
(396 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 24 0.55
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 1.7
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 2.2
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 22 2.9
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 2.9
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 3.9
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 3.9
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 3.9
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 21 3.9
AB201717-1|BAD90662.1| 107|Apis mellifera apime-corazonin prepr... 21 5.1
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 6.8
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 6.8
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 6.8
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 20 9.0
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 20 9.0
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 20 9.0
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 20 9.0
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 20 9.0
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 20 9.0
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 24.2 bits (50), Expect = 0.55
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 244 LWFQSRKTKIRRACPAL 194
+WFQ+R+TK ++ P L
Sbjct: 54 IWFQNRRTKWKKQNPGL 70
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 1.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 167 PLAGSNTTIFLSGSGYNLSSHSCKLFKLASRQNS 66
P+ GS + SGS NLSS S ASR+N+
Sbjct: 594 PINGSGASG--SGSAENLSSGSNNQTSSASRENT 625
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 22.2 bits (45), Expect = 2.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -1
Query: 192 WTDGVRSLAVGRLQHHD 142
WTDG+ +A+ + HD
Sbjct: 371 WTDGIFGMALSPVDIHD 387
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 21.8 bits (44), Expect = 2.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 347 LCKCLCKMLPNIL 309
+CKC CK N L
Sbjct: 77 ICKCFCKRRTNTL 89
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.8 bits (44), Expect = 2.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 347 LCKCLCKMLPNIL 309
+CKC CK N L
Sbjct: 525 ICKCFCKRRTNTL 537
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.4 bits (43), Expect = 3.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 182 VYVVLPLAGSNTTIFLSGSGYNLSS 108
+Y+VLP+ IF++G N+S+
Sbjct: 50 LYIVLPITVIYAVIFVTGLVGNVST 74
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.4 bits (43), Expect = 3.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 92 IVCTNGKTSCIPSPIKISWC 151
+V ++G SC+PS ++ C
Sbjct: 150 LVFSSGSVSCVPSVKHVAKC 169
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 3.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 141 YRGVGAGQRQDYVHHRSKSA 200
Y G+G G D ++ R+K +
Sbjct: 1440 YNGIGTGDPSDMLNTRTKGS 1459
Score = 20.2 bits (40), Expect = 9.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 131 GSGYNLSSHSCKLFKLASRQNSFFKNLPSK 42
G N S+HS + RQN + +PS+
Sbjct: 1764 GHPTNASAHSRSGSQSMPRQNGRYSRVPSQ 1793
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 21.4 bits (43), Expect = 3.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 119 NLSSHSCKLFKLASRQNSFFKNLPSKQLQ 33
N S +L K A N F KNL Q++
Sbjct: 84 NKRDRSRELIKAAILANDFMKNLELTQIR 112
>AB201717-1|BAD90662.1| 107|Apis mellifera apime-corazonin
preprohormone protein.
Length = 107
Score = 21.0 bits (42), Expect = 5.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -1
Query: 198 HSWTDGVRSLAVGRLQHHD 142
H WT+G RS ++ L + +
Sbjct: 28 HGWTNGKRSTSLEELANRN 46
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 6.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 77 DWLI*IVCTNGKTSCIPSP 133
DW I+ N KT +P+P
Sbjct: 340 DWWKDIMLLNEKTLAVPAP 358
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 6.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 77 DWLI*IVCTNGKTSCIPSP 133
DW I+ N KT +P+P
Sbjct: 340 DWWKDIMLLNEKTLAVPAP 358
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 6.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 77 DWLI*IVCTNGKTSCIPSP 133
DW I+ N KT +P+P
Sbjct: 340 DWWKDIMLLNEKTLAVPAP 358
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 20.2 bits (40), Expect = 9.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 110 KTSCIPSPIKISW 148
K I PIK+SW
Sbjct: 240 KNQTITCPIKVSW 252
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 20.2 bits (40), Expect = 9.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 110 KTSCIPSPIKISW 148
K I PIK+SW
Sbjct: 240 KNQTITCPIKVSW 252
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 20.2 bits (40), Expect = 9.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 110 KTSCIPSPIKISW 148
K I PIK+SW
Sbjct: 291 KNQTITCPIKVSW 303
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 20.2 bits (40), Expect = 9.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 110 KTSCIPSPIKISW 148
K I PIK+SW
Sbjct: 240 KNQTITCPIKVSW 252
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 20.2 bits (40), Expect = 9.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 79 LANLNSLHEWEDKLYP 126
L NL++LH+ LYP
Sbjct: 98 LQNLDALHDHLGTLYP 113
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 20.2 bits (40), Expect = 9.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 79 LANLNSLHEWEDKLYP 126
L NL++LH+ LYP
Sbjct: 98 LQNLDALHDHLGTLYP 113
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,245
Number of Sequences: 438
Number of extensions: 3159
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9761793
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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