Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24h02
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    26   5.5  
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.7  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   9.7  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   9.7  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    25   9.7  

>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 543 RRQDLHQFNYFISLRTV 593
           RR DLH FN +  LRTV
Sbjct: 242 RRTDLHPFNLYRHLRTV 258


>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 467 PRLRPTKWKEIQKRLSFLYRKLNRK 541
           P+ R +KWK+IQ    F    LNR+
Sbjct: 66  PKKRVSKWKDIQLFEKFAEPSLNRE 90


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 308 ALFGQNDYIDILGPGNLHPVKTLYNISSWIRGVSG 412
           A+FGQND+ ++LG    H  + L     WI  + G
Sbjct: 69  AMFGQNDFSNLLGLKLDHTARPL-----WINPIDG 98


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 236 LPRSEGKALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNISSWIRGVS 409
           +PR +  AL    Y    P+   +        ID L PG L  ++ LYN+   + G++
Sbjct: 145 MPRIQRFALESSFYTGYEPFDAERVFTN----IDDLNPGKLISLQNLYNLLKKLGGIA 198


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 582 LRTVVFYVDK*DTKYKEQIKPF 647
           L T  FY++K +TK+ + ++PF
Sbjct: 4   LATPFFYLNKKETKHSDWVEPF 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,593
Number of Sequences: 5004
Number of extensions: 60280
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)