Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24h02
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68752-5|CAA92984.1|  199|Caenorhabditis elegans Hypothetical pr...    72   4e-13
Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF047665-1|AAP13766.1|  499|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF039053-2|AAC25877.3|  294|Caenorhabditis elegans Serpentine re...    27   8.9  

>Z68752-5|CAA92984.1|  199|Caenorhabditis elegans Hypothetical
           protein T12G3.5 protein.
          Length = 199

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
 Frame = +2

Query: 203 GYQEKIWRGGL--LPRSEGKALPI--PEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVK 370
           GY  +  + G+  LPR     +P+  P Y+  + WS   A FGQNDYID+LG G++HP +
Sbjct: 45  GYTFRYHQQGVDPLPRIPDCKVPVARPAYKVRDQWSDEAARFGQNDYIDLLGDGSVHPAQ 104

Query: 371 TLYNISSWIRGVSGHEYHILLRKKKMWAKTGTPRLR---PTKWKEIQKRLSFLYRKLN 535
             Y+  +W+RG  G      L K   +      +L+   P +W E++KR+ +L  + N
Sbjct: 105 LQYHTPTWLRGFPGQHKANELIKLIHYRNLYDAKLKQNSPKRWHELRKRIKYLMMQHN 162


>Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical
           protein F19H6.3 protein.
          Length = 914

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +2

Query: 137 KPTVNVVRTRYHADKKRLVRRYGY----QEKIWRGGLLPRSEGKALPIPEYRPDNPWSVR 304
           K  ++V+ +RY  +K +L  +YGY      + W       S+G    +PE + +  +  R
Sbjct: 164 KKHLHVLPSRYAINKPKLPIKYGYDWLFDREEWEKDEQTFSDGAGFTLPEVKTEVVYEER 223

Query: 305 KALFGQNDYID 337
              F Q   +D
Sbjct: 224 SLKFYQQPVVD 234


>AF047665-1|AAP13766.1|  499|Caenorhabditis elegans Hypothetical
           protein T23E1.2 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 419 YHILLRKKKMWAKTGTPRLRPTKWKEIQKRLSFLYRK 529
           Y  LL  + ++ ++ TP +    W ++Q+ LSF+Y+K
Sbjct: 334 YRELLVNRPLFDESNTPGMW---WNDLQEELSFMYKK 367


>AF039053-2|AAC25877.3|  294|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 20 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 419 IHVHSHPESMTIYYIMF*LDVDYQVLKCLYSHFVQKELFLLTKDYQVCIQVLVVPF 252
           + V      MT++Y  F LDV   +L  L + F+  ++   T   ++  Q++VV F
Sbjct: 28  VTVERRKNDMTLFYFRFLLDV---ILSVLVAAFLTSDIIYFTFSEKMDSQLIVVIF 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,655
Number of Sequences: 27780
Number of extensions: 327144
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)