Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24h02
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.85 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   3.4  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   6.0  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   6.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.0  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 353 NLHPVKTLYNISSWIRGVSGHEYHI 427
           ++H  ++ +N  SW R  S HE H+
Sbjct: 75  DVHHFESSFNAQSWQRLTSLHELHV 99


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/48 (27%), Positives = 18/48 (37%)
 Frame = +2

Query: 200 YGYQEKIWRGGLLPRSEGKALPIPEYRPDNPWSVRKALFGQNDYIDIL 343
           YG     W   + P+ E     +  Y   N   + K L+G N  I  L
Sbjct: 90  YGLTLPSWTNNIFPKGELFDATVFTYNITNSTPLLKKLYGGNSTIIFL 137


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 487 FCRSQSRCTSFCPH 446
           F R   RC  FCP+
Sbjct: 43  FSRCDGRCQRFCPN 56


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 487 FCRSQSRCTSFCPH 446
           F R   RC  FCP+
Sbjct: 43  FSRCDGRCQRFCPN 56


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 78  NYKLLNLKFKRSYIY*HKTSFNNNS 4
           NYK LNL  ++   Y H  +F + S
Sbjct: 449 NYKSLNLAAQKREYYSHYVAFKSLS 473


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 20/76 (26%), Positives = 26/76 (34%)
 Frame = +2

Query: 200 YGYQEKIWRGGLLPRSEGKALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLY 379
           YG     W   + PR E     +  Y   N   + K L+G    + I     L  V    
Sbjct: 187 YGLTLPSWTNNIFPRGELFDATVFTYNITNSTPLLKKLYG-GPLLRIFTKHMLDVVSGTQ 245

Query: 380 NISSWIRGVSGHEYHI 427
                I   SGHE +I
Sbjct: 246 KKKRKIYLFSGHESNI 261


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 20/76 (26%), Positives = 26/76 (34%)
 Frame = +2

Query: 200 YGYQEKIWRGGLLPRSEGKALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLY 379
           YG     W   + PR E     +  Y   N   + K L+G    + I     L  V    
Sbjct: 202 YGLTLPSWTNNIFPRGELFDATVFTYNITNSTPLLKKLYG-GPLLRIFTKHMLDVVSGTQ 260

Query: 380 NISSWIRGVSGHEYHI 427
                I   SGHE +I
Sbjct: 261 KKKRKIYLFSGHESNI 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,071
Number of Sequences: 438
Number of extensions: 4679
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)