Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24g24
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    38   0.001
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    32   0.084
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    30   0.26 
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    30   0.34 
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    30   0.34 
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    28   1.4  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   1.8  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    27   2.4  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.4  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   3.2  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    26   5.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.5  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   5.5  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    26   5.5  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   5.5  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    25   9.7  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   9.7  

>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +1

Query: 565 GEVLGEGAYASVXTCVNIYTGLEFAVKIIDK 657
           GE+LGEG+Y++V T     T  E+A+K++DK
Sbjct: 102 GEILGEGSYSTVLTATENSTKREYAIKVLDK 132


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 31.9 bits (69), Expect = 0.084
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 565 GEVLGEGAYASVXTCVNIYTGLEFAVKIIDK 657
           G VLG G YA+V   V+I T   +A KI++K
Sbjct: 34  GRVLGGGTYATVREAVHIETNKMYAAKIMNK 64


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 559 LTGEVLGEGAYASVXTCVNIYTGLEFAVKIID 654
           + GE++G G Y  V   +NI TG   AVK ++
Sbjct: 826 MKGELIGNGTYGKVFLAMNINTGELIAVKQVE 857


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = +1

Query: 517 GSSVVTSCFQDLYKLTGEVLGEGAYASVXTCVNIYTGLEFAVKIIDK 657
           G+S + S       + G+++G+G+++ V    +  +  E+A+K++DK
Sbjct: 41  GTSHIGSIKSPADYVFGDIIGDGSFSKVRRATDKKSWKEYAIKVLDK 87


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 568 EVLGEGAYASVXTCVNIYTGLEFAVKII 651
           E+LG+G Y SV    N + G+E+A+K I
Sbjct: 228 ELLGKGGYGSVYKARNKFDGVEYALKKI 255


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 574 LGEGAYASVXTCVNIYTGLEFAVKIIDK 657
           LG G +A V   V + +G  +A+KII+K
Sbjct: 173 LGSGTFAVVKLAVEVNSGKWYAIKIINK 200


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 565 GEVLGEGAYASVXTCVNIYTGLEFAVKIIDKV 660
           G+ +G G+   V    ++ TG +FA+KI+ ++
Sbjct: 128 GKTIGAGSMGKVKVAHHLKTGEQFAIKIVTRL 159


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 571 VLGEGAYASVXTCVNIYTGLEFAVKIIDK 657
           ++G GAY  V    +IY G  +AVK + K
Sbjct: 23  IIGAGAYGVVYKAEDIYDGTLYAVKALCK 51


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 568 EVLGEGAYASVXTCVNIYTGLEFAVKII 651
           + LG+G++  V  C++  TG   A+KII
Sbjct: 703 DFLGKGSFGQVLRCIDYETGKLVALKII 730


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 295 AVSTYQAIKMVKKVSEESVDSGVGRCSSQSGSERESDETPRGAEQSAPVDI 447
           A++    IK  K      +  G  RC +   +  +SD     ++ S PVD+
Sbjct: 462 AINAIDRIKQKKGYENYRISYGKDRCGNPPRTNSKSDVLSVSSDMSMPVDL 512


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +1

Query: 574 LGEGAYASVXTCVNIYTGLEFAVKIIDK 657
           +G+GA+++V   ++  TG + A+K++ +
Sbjct: 130 MGDGAFSNVYKAIHNRTGEKVAIKVVQR 157


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 532 TSCFQDLYKLTGEVLGEGAYA 594
           TSC Q  Y+L  E L +G+Y+
Sbjct: 63  TSCIQAYYELRNESLAKGSYS 83


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +2

Query: 80  F*ECLFITFRHNLRT------SFSTVVLFSLISRIIFGVFFFLHLLTLYRFHVEK 226
           F + L+  F H  R+      S +T VLF  ++ + F  FFF  +L L   +V+K
Sbjct: 600 FQQALYFLFEHPRRSFTLLFPSKTTWVLFLNLTLLNFASFFFFMVLDLGNSYVDK 654


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 568 EVLGEGAYASVXTCVNIYTGLEFAVKII 651
           E LGEG YA V    N  TG   A+K+I
Sbjct: 7   EKLGEGTYAHVYKGQNRVTGEIVALKVI 34


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 565 GEVLGEGAYASVXTCVNIYTGLEFAVK 645
           G+ LG+GA+ +V   +NI  G   AVK
Sbjct: 12  GDCLGKGAFGAVYRGLNIKNGETVAVK 38


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 565 GEVLGEGAYASVXTCVNIYTGLEFAVKIIDK 657
           G  +G GA+ASV  C +    + +AVK ++K
Sbjct: 13  GREIGTGAFASVRLCYDDNAKI-YAVKFVNK 42


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 565  GEVLGEGAYASVXTCVNIYTGLEFAVK 645
            G ++G G++ +V   VN+ TG   AVK
Sbjct: 1123 GGLIGSGSFGTVYRAVNLDTGDLMAVK 1149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,956
Number of Sequences: 5004
Number of extensions: 41104
Number of successful extensions: 159
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)