Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24g20
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   0.62 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 178 YFNKISCNHSPEPMPSSSHAVSLREKGMGQEWIRISD 68
           Y+N I+    P P+P   H  +   + MG  WI I +
Sbjct: 333 YYNIINIEQIPVPVPVPIHCGNFPPRPMG-PWISIQE 368


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = -2

Query: 214 SNMCRDSRRRMYYFNKISCNHSPEPMPSSSHAVSLREKGMGQEWIRISD 68
           +N   ++  +  Y+N I+    P P+P   +  +   + MG  WI + +
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFPPRPMG-PWISMQE 148


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = -2

Query: 214 SNMCRDSRRRMYYFNKISCNHSPEPMPSSSHAVSLREKGMGQEWIRISD 68
           +N   ++  +  Y+N I+    P P+P   +  +   + MG  WI + +
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFPPRPMG-PWISMQE 148


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 588 HKLSQHSCPTHVQLVSYAQW 529
           H LS H C   V+ V  A W
Sbjct: 554 HNLSLHKCFMRVENVKGAVW 573


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,963
Number of Sequences: 438
Number of extensions: 3728
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)