Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24g19
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 260 6e-70
07_01_0756 + 5819367-5820038,5820847-5821005 257 6e-69
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 66 3e-11
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 30 2.2
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.8
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 3.8
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 28 6.6
11_01_0395 + 2999855-2999920,3000605-3002191 28 8.7
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 260 bits (638), Expect = 6e-70
Identities = 115/150 (76%), Positives = 138/150 (92%)
Frame = +1
Query: 172 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 351
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 352 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 531
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 532 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTG 621
IG+PHTVPCKVTGKCGSVTVR++PAPRG+G
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMVPAPRGSG 186
Score = 52.4 bits (120), Expect = 4e-07
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 620 GIVSAPVPXKLLQMAGVQDCYTSARGSTGTLGNF 721
GIV+A VP K+LQ AG++D +TS+RGST TLGNF
Sbjct: 186 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 219
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 257 bits (630), Expect = 6e-69
Identities = 115/150 (76%), Positives = 137/150 (91%)
Frame = +1
Query: 172 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 351
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 352 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 531
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Query: 532 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTG 621
IGKPHTVPCKVTGKCGSVTVR++PAPRG+G
Sbjct: 160 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSG 189
Score = 52.4 bits (120), Expect = 4e-07
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 620 GIVSAPVPXKLLQMAGVQDCYTSARGSTGTLGNF 721
GIV+A VP K+LQ AG++D +TS+RGST TLGNF
Sbjct: 189 GIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNF 222
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 66.1 bits (154), Expect = 3e-11
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +1
Query: 391 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 567
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 568 GKCGSVTVRLIPAPRGT 618
K GSVTVR++ P G+
Sbjct: 57 DKYGSVTVRMMLPPMGS 73
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = +2
Query: 602 LPLVVLGIVSAPVPXKLLQMAGVQDCYTSARGSTGTLGNF 721
LP + +V+ VP K+L+ AG++D +TS+RGST TL NF
Sbjct: 68 LPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 319 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 498
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 499 LPV 507
+ V
Sbjct: 231 VTV 233
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 564 DLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 415
DL D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 453 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 337
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 555 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 397
R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>03_02_0913 +
12344096-12344125,12344284-12345970,12346243-12346573,
12346712-12347567,12347760-12347883,12348469-12348688,
12348771-12349229,12349318-12349519
Length = 1302
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 676 VLYTSHLKKLXRNWRRHNSQYHEGQESAGLLQN 578
VL+ + +K +WRRH S +E A +LQ+
Sbjct: 219 VLFVTAIKDGYEDWRRHRSDRNENNREALVLQS 251
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 259 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 378
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,588,479
Number of Sequences: 37544
Number of extensions: 461953
Number of successful extensions: 1270
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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