Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24g19
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 249 2e-66
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 30 1.5
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 30 1.5
Z50797-6|CAA90673.1| 129|Caenorhabditis elegans Hypothetical pr... 29 3.4
AB086409-1|BAC44992.1| 129|Caenorhabditis elegans ABF-5 protein. 29 3.4
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 4.5
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 5.9
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 5.9
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 249 bits (609), Expect = 2e-66
Identities = 121/149 (81%), Positives = 129/149 (86%)
Frame = +1
Query: 175 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 354
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110
Query: 355 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI 534
QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 535 GKPHTVPCKVTGKCGSVTVRLIPAPRGTG 621
G PHTVPCKVTGKC SV VRLIPAPRGTG
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTG 199
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +2
Query: 620 GIVSAPVPXKLLQMAGVQDCYTSARGSTGTLGNFA 724
GIVSAPVP KLL MAG++DCYT+A+GST TLGNFA
Sbjct: 199 GIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFA 233
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 380 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 204
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 203 VTGT 192
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 380 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 204
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 203 VTGT 192
+ T
Sbjct: 582 QSNT 585
>Z50797-6|CAA90673.1| 129|Caenorhabditis elegans Hypothetical
protein T22H6.5 protein.
Length = 129
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +1
Query: 493 SVLPVRRGYWGNKIGKPHTVP-----CKVTGKCGSVTVRLIPAPRGTGNCVC 633
S+ RR WG + G T P C++ +CG R PA T NCVC
Sbjct: 22 SICVTRRTDWG-QFGSFFTDPLCDVWCRIR-RCGKGQCREDPATSNTANCVC 71
>AB086409-1|BAC44992.1| 129|Caenorhabditis elegans ABF-5 protein.
Length = 129
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +1
Query: 493 SVLPVRRGYWGNKIGKPHTVP-----CKVTGKCGSVTVRLIPAPRGTGNCVC 633
S+ RR WG + G T P C++ +CG R PA T NCVC
Sbjct: 22 SICVTRRTDWG-QFGSFFTDPLCDVWCRIR-RCGKGQCREDPATSNTANCVC 71
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 516 TSSNW*NRQLSKDNSASNGSG 454
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 330 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 473
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 330 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 473
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,938,391
Number of Sequences: 27780
Number of extensions: 371387
Number of successful extensions: 1173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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