Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24g06
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    27   3.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   7.4  

>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = -2

Query: 613 RVRS*LTLQQNFEQVPKSCSFACFLIKPSVQTPPR*ST*FDSNFASHRRPRHLILAAVSK 434
           R +  +T QQ FE+  K+ +     ++  V    +       N A HR+ R  IL  +SK
Sbjct: 173 RQKGTMTQQQRFEEAAKTEAQNLSSLRNYVHLEEQRRLRLKRNAAKHRQLREPILKFISK 232

Query: 433 TDTADNTDNCCN 398
           T + ++     N
Sbjct: 233 TISTEDGREASN 244


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 231  NQRRQSVGLKAMCVRGRFQNYND 163
            N++RQ+V LKA C+  + +N N+
Sbjct: 1347 NKKRQTVVLKAECMLKQLENNNE 1369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,786
Number of Sequences: 5004
Number of extensions: 36844
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)