Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24g06
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1834 + 40214378-40214563,40214728-40214818,40215006-402150...    28   7.7  

>01_06_1834 +
           40214378-40214563,40214728-40214818,40215006-40215093,
           40215444-40215695,40215927-40216101,40216243-40216329,
           40216445-40216513,40216638-40216734,40217010-40217092,
           40217373-40217480,40217672-40217793,40217921-40218028,
           40218121-40218194,40218492-40218617,40219655-40219722,
           40219930-40220079,40220164-40220214,40220678-40220734,
           40220824-40220970,40221064-40221155,40221516-40221625,
           40221728-40221791,40221883-40222032,40222554-40222788
          Length = 929

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = -2

Query: 106 SWYLW---CLTNRVQFAC*HLCLHIWAIA 29
           SW+ W   CL+ RV FAC + C H+ +++
Sbjct: 860 SWFSWINICLSLRVNFAC-YFCKHMISLS 887


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,848,288
Number of Sequences: 37544
Number of extensions: 233385
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)