Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24g01
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...   105   4e-24
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    28   1.0  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.4  
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    26   4.1  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    26   4.1  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    25   9.5  

>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score =  105 bits (253), Expect = 4e-24
 Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
 Frame = +1

Query: 85  EEMVERFKLLGLNEQKAKETLKNANVTKVLLAALDEVQLQSLPLGA--GILIYHLATKIK 258
           EE+  +F  +GLNE   K+TLKN  ++  L   ++E  + S       G L++ LA    
Sbjct: 6   EELRAKFTKIGLNETTVKDTLKNKKLSSSLNKVIEETNVGSSGCDRTIGNLLFTLANASL 65

Query: 259 PQTMSKLN----FICQYIASGKLDSTLRVDAALDYLLGNINEANVNIEEFEKACGVGVIV 426
            Q   K N    FI   I SG L + L+V+AA+ Y     ++  ++  EF+K  GVGV++
Sbjct: 66  KQKDPKSNAHEAFIASKIVSGDLKTNLQVNAAITYCK---DKDTIDESEFDKETGVGVVL 122

Query: 427 TPEQVEQAVEKHMVKYKQELLEKRYR-FNSGIIMQAVRADLTWADGKAIKSEVDVQIFDL 603
           TPEQ+EQ V  ++ + K ++LE+RY+  N         A L WA    +K  +D +  +L
Sbjct: 123 TPEQIEQLVGDYVAENKSKILEQRYQLLNPSASALRQHALLKWAPQLEVKQTLDRKFLEL 182

Query: 604 LGPKTEADLA 633
           LGPKTE D A
Sbjct: 183 LGPKTEQDAA 192


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 644 LGTGARSASVLGPNKSKICTSTSLFIALPSAQVRS-ALTACMIIPELNLYLFSNSSCL 474
           +G       VLGP    + T    F+   SA   + +L    ++P+L+L    NS CL
Sbjct: 282 VGWERNGKGVLGPRVVNLSTVLDPFVLSESASTLNLSLMRWRLVPQLDLDRIQNSKCL 339


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 469 KYKQELLEKRYRFNSGIIM--QAVRADLTWADGKAIKSEVDVQIFDLLGPKTEADL 630
           K  +E++ K    N+ II+   A   DL  +DG  +  EVD +    +G  T+ DL
Sbjct: 171 KQIREMVLKYISKNNAIILAVNAANTDLANSDGLKLAREVDPEGLRTIGVLTKVDL 226


>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 7   YLSQFANIVIYKLK*NPIKIGIIMTPEEMVERF-KLLGLNEQKAKETLKNANVTKVLLAA 183
           YL+  A +VIY L  NP+ + +I      V    KL G + Q +   + N N+  +L   
Sbjct: 65  YLAIIAMLVIYALIRNPLLLIVIGIGVGGVYGIRKLQGADLQLSHRVISNQNLYVILACV 124

Query: 184 LDEVQLQSLPL 216
           L  + L + P+
Sbjct: 125 LIPLGLFASPI 135


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 382 NIEEFEKACGVGVIVTPEQVEQAVEKHMVKYKQELL 489
           NI+    AC    +  P  V  +V K+ +++KQ L+
Sbjct: 54  NIDSKYVACNSRSVTPPNDVASSVSKNTLRHKQRLM 89


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 163 TKVLLAALD-EVQLQSLPLGAGILIYHLATKIKPQTMSKLNFICQYIASG 309
           +++ + ++D +++LQ   L    L YHL T+      ++LN++ +YI  G
Sbjct: 71  SRLKITSVDRKIRLQIHQLHLLCLTYHLCTRNTWCDDNRLNYLVKYIPPG 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,229
Number of Sequences: 5004
Number of extensions: 49546
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)