Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f19
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.1  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   4.9  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   4.9  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    26   6.4  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    25   8.5  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +2

Query: 377  EFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHLFHSLHAYVPSVSDL 526
            +FR +  Y + +DF+ +N  +N+   +  F S   LFH++ A +  VS++
Sbjct: 1059 QFRTDLTYKQKLDFVLKNELDNILPLSEVFPS---LFHAIQATLEKVSNV 1105


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 353 YALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHLFH 490
           YA F+ +    IN+ +  L+        N V+N   +F+ST  ++H
Sbjct: 850 YATFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNLSFNSTDAVYH 895


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 595 VYCVVEQLCQIFCLQSNLFALLHQIADAGHVRVQRVKQM 479
           V C V  LC+++C+  +  +    I D   + V  V+ M
Sbjct: 36  VVCFVSVLCRLYCILMSAASATQTICDQSILHVHGVENM 74


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 321 RFKANGSVCALTTPSLNDMFSF*ASTQTSNTL--ALKSINFLN 199
           R K N ++  + TP  +D+     S+ T+NTL   ++S NF N
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTANTLIKGIQSYNFQN 328


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 113 ARRQHVRHQAQY*TRIQNASVGPHVCA*QQTANVF 9
           ARRQ  R QA++  R  + S+G +  + Q ++N+F
Sbjct: 173 ARRQATRLQAKHLRRATSGSLGYNPYSLQNSSNIF 207


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -2

Query: 298 LRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 140
           + L D  +   ++ + +Y  + ++     K  + +  +F  DP+L + IEN Y
Sbjct: 352 IHLGDRDVPNALMFIDKYRQVPHILAPLVKVLQQL--EFLRDPYLVQYIENEY 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,060
Number of Sequences: 5004
Number of extensions: 66048
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)