Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f19
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0134 + 12879254-12879596,12879689-12879796,12879905-128800...    31   0.95 
05_01_0428 - 3379116-3379262,3379357-3379537,3379690-3379785,337...    30   1.7  
01_07_0229 + 42161770-42164562                                         29   3.9  
03_01_0222 - 1756769-1756801,1756889-1756917,1756975-1757859,175...    28   6.7  
01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600...    28   6.7  
04_04_1258 + 32165918-32166041,32167218-32167384,32167569-321677...    28   8.9  
02_01_0166 + 1154695-1156569                                           28   8.9  

>01_03_0134 +
           12879254-12879596,12879689-12879796,12879905-12880000,
           12880090-12880182,12880861-12880949,12881313-12881588,
           12881656-12881808
          Length = 385

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 24/74 (32%), Positives = 36/74 (48%)
 Frame = +2

Query: 347 TSYALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHLFHSLHAYVPSVSDL 526
           TS  L KL   F     Y+ L+++L + FP   K+  F  S   +  H    YVP ++DL
Sbjct: 170 TSSDLTKLNDGFVAEDAYNFLVNWL-DRFPQ-YKDHEFYISGESYAGH----YVPQLADL 223

Query: 527 VKERKQIRLQTEYL 568
           V ER + +    Y+
Sbjct: 224 VYERNKDKKANRYI 237


>05_01_0428 -
           3379116-3379262,3379357-3379537,3379690-3379785,
           3379886-3380034,3380120-3380392,3380895-3380983,
           3381923-3382015,3382143-3382238,3382370-3382477,
           3382917-3383208
          Length = 507

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +2

Query: 347 TSYALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHLFHSLHAYVPSVSDL 526
           TS  L  L  +F     YS L+++  + FP   K+  F  S   +  H    YVP ++DL
Sbjct: 153 TSSDLSNLNDDFVAEDAYSFLVNWF-KRFPQ-YKDNEFYISGESYAGH----YVPQLADL 206

Query: 527 VKERKQIRLQTEYL 568
           V ER + +  + Y+
Sbjct: 207 VYERNKDKRASTYI 220


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 301 CLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKI 155
           CL+LN  +IK   + + +   LKYL      F E + +     P+L K+
Sbjct: 556 CLKLNQTLIKSLPVAIGQLTKLKYLNLSYMDFLEKIPYGVI--PNLSKL 602


>03_01_0222 -
           1756769-1756801,1756889-1756917,1756975-1757859,
           1758244-1759273,1759354-1759401,1759626-1760480
          Length = 959

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 319 LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFE 218
           LQ  W   RL + I+KR  +    + DLKYL  E
Sbjct: 860 LQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDE 893


>01_01_0774 -
           6004040-6004371,6004634-6005215,6005391-6005657,
           6005845-6006163
          Length = 499

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = -2

Query: 280 IIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPADN 101
           II+RH L    ++ L +   E +   + + F +  D    K+I N ++  +++F+  A  
Sbjct: 397 IIRRHGLASDLFSCLLFNELEAFNPRDQLAFAYVRDQMSPKVIMNMFD--VEVFEQIA-- 452

Query: 100 MCDIRHNIKR 71
             + RHN+KR
Sbjct: 453 -VEYRHNLKR 461


>04_04_1258 +
           32165918-32166041,32167218-32167384,32167569-32167769,
           32168472-32168631,32168729-32168942,32169160-32169307
          Length = 337

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 268 HVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIF 119
           HVL    ++D++YL  EK   + Y + +   +   CK+ E N    + +F
Sbjct: 143 HVLDEDSWSDVEYLTKEKPPAWAYSVSKVLMEKAACKLAEENNISLITVF 192


>02_01_0166 + 1154695-1156569
          Length = 624

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 530 KERKQIRLQTEYLAKLFNNTIND--FKLYTELYE 625
           K R+ + L T  +  LF N +ND  +K+ T LY+
Sbjct: 476 KIRQNVDLSTNLVDTLFRNNLNDRAYKIVTSLYD 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,171,454
Number of Sequences: 37544
Number of extensions: 377017
Number of successful extensions: 966
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)