Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f19
         (737 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85134-1|CAA59446.1|  538|Homo sapiens RB protein binding protei...    33   1.4  
BC075060-1|AAH75060.1|  538|Homo sapiens retinoblastoma binding ...    33   1.4  
BC075059-1|AAH75059.1|  538|Homo sapiens retinoblastoma binding ...    33   1.4  
BC053856-1|AAH53856.1|  538|Homo sapiens retinoblastoma binding ...    33   1.4  
BC037284-1|AAH37284.1|  500|Homo sapiens RBBP5 protein protein.        33   1.4  
AL583832-2|CAI15287.1|  500|Homo sapiens retinoblastoma binding ...    33   1.4  
AL583832-1|CAI15286.1|  538|Homo sapiens retinoblastoma binding ...    33   1.4  
AB065468-1|BAC05727.1|  337|Homo sapiens seven transmembrane hel...    32   1.9  
AY653734-1|AAT72063.1|  963|Homo sapiens brefeldin resistant Arf...    31   5.7  

>X85134-1|CAA59446.1|  538|Homo sapiens RB protein binding protein
           protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 312 ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 205
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC075060-1|AAH75060.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 312 ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 205
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC075059-1|AAH75059.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 312 ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 205
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC053856-1|AAH53856.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 312 ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 205
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>BC037284-1|AAH37284.1|  500|Homo sapiens RBBP5 protein protein.
          Length = 500

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 312 ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 205
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>AL583832-2|CAI15287.1|  500|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 500

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 312 ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 205
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>AL583832-1|CAI15286.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 312 ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINF 205
           A G +  L T S + + SF  +T TSNT A+KSI F
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEF 206


>AB065468-1|BAC05727.1|  337|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 337

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +2

Query: 563 YLAKLFNNTI------NDFKLYTELYEFIERTEGVDCCCPCQLLHKSLFNTRNYVKTPKL 724
           YL  LF N +      +D  L+T +Y F+     VD C P   + K L N +   +T   
Sbjct: 35  YLTGLFGNLLILLAIGSDHCLHTPMYFFLANLSLVDLCLPSATVPKMLLNIQTQTQTISY 94

Query: 725 *NCL 736
             CL
Sbjct: 95  PGCL 98


>AY653734-1|AAT72063.1|  963|Homo sapiens brefeldin resistant
           Arf-GEF 2b isoform protein.
          Length = 963

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +2

Query: 257 NENMSFNDGVVKAQTDPFALKRGGHNVQKWTSYALFKLFKEFRINKNYSKLIDFLTEN 430
           +E+   +  +   Q +    K GG  V +  +  +   F+++++NKN+ +L   ++EN
Sbjct: 107 SESYELSSDLQDKQVEMLERKYGGRLVTRHAARTIQTAFRQYQMNKNFERLRSSMSEN 164


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,099,451
Number of Sequences: 237096
Number of extensions: 2118404
Number of successful extensions: 12677
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12677
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)