Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f19
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical ...    37   0.017
Z70680-5|CAA94574.1|  402|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U88315-15|AAB42365.1|  351|Caenorhabditis elegans Annexin family...    30   1.5  
AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pomb...    30   1.5  
AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pomb...    30   1.5  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U49830-14|AAK31479.1|  182|Caenorhabditis elegans Hypothetical p...    28   6.0  
AF000266-10|AAC71174.2|  124|Caenorhabditis elegans Hypothetical...    28   6.0  

>AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical
           protein W10D9.3 protein.
          Length = 394

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
 Frame = +2

Query: 344 WTSYALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFS----STGHLFHSLHAYVP 511
           W  +     + +F   +NY   IDFL E     ++N  F FS    ++    +  H +  
Sbjct: 156 WNCFDFVMEYMKFTNYRNYRSKIDFLEEFVTKKLENVNFKFSQQNLNSAPQMNPDHRFFK 215

Query: 512 SVSDLVKERKQIR---LQTEYLAKLFNNTINDFKLYTE 616
            ++D +++ +Q      QT++LA  F    +D++  TE
Sbjct: 216 IMADFLEDSEQNDRNICQTDFLADQFEKFTHDYREKTE 253


>Z70680-5|CAA94574.1|  402|Caenorhabditis elegans Hypothetical
           protein C25G4.8 protein.
          Length = 402

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = -2

Query: 400 VVFVYTKLFKQFK*GVTGPFLHIMASSLQSKWICLR-LNDAIIKRHVLVLSEYADLKYLG 224
           +V + ++ F+Q     T  +    A S+QS  ICL  +   I K+  L+  + A   +  
Sbjct: 225 IVCLASQFFRQHLKDTTTEYTVGRADSVQSIDICLTYMITGIYKKPALLSPKLAFEIFAL 284

Query: 223 FEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQI 122
             ++K FE  + +   + H C+ ++ NY   M +
Sbjct: 285 AMQWKVFEPKVLKNSIEKHCCEELQKNYEDIMYV 318


>U88315-15|AAB42365.1|  351|Caenorhabditis elegans Annexin family
           protein 4 protein.
          Length = 351

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -2

Query: 358 GVTGPFLHIMASSLQSKWICLRLNDAIIKRHVLVL 254
           GV G  +H++  + + + + +R+ND ++ +HV +L
Sbjct: 157 GVVGKMMHLLLCNNREEGLGVRVNDELVDKHVKIL 191


>AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform b protein.
          Length = 684

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 440 NVKNKTFNFSSTGHLFHSLHAYVPSVS-DLVKERKQIRLQTEYLAKLFNNTINDFKLYT- 613
           NVKN +    S  HL   LH Y  S   ++ ++RK      +Y  ++  N + D + Y  
Sbjct: 291 NVKNTSGKDFSNEHLSQILHVYPQSYHIEMREQRKAFGQGGKYELEVRPNLVEDLRGYIY 350

Query: 614 ELYEFIERTEGVDCCCPCQLL 676
           E       TE +   CP +LL
Sbjct: 351 EKSPTDGDTEDLPLVCPSKLL 371


>AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform a protein.
          Length = 741

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 440 NVKNKTFNFSSTGHLFHSLHAYVPSVS-DLVKERKQIRLQTEYLAKLFNNTINDFKLYT- 613
           NVKN +    S  HL   LH Y  S   ++ ++RK      +Y  ++  N + D + Y  
Sbjct: 291 NVKNTSGKDFSNEHLSQILHVYPQSYHIEMREQRKAFGQGGKYELEVRPNLVEDLRGYIY 350

Query: 614 ELYEFIERTEGVDCCCPCQLL 676
           E       TE +   CP +LL
Sbjct: 351 EKSPTDGDTEDLPLVCPSKLL 371


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 189 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 16
           FNF  T   + +   T+       + P TTC  +GT+LN  ++ Q   TC C  L   +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336

Query: 15  C 13
           C
Sbjct: 337 C 337


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 189 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 16
           FNF  T   + +   T+       + P TTC  +GT+LN  ++ Q   TC C  L   +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336

Query: 15  C 13
           C
Sbjct: 337 C 337


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 189 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 16
           FNF  T   + +   T+       + P TTC  +GT+LN  ++ Q   TC C  L   +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336

Query: 15  C 13
           C
Sbjct: 337 C 337


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 356  ALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHL 484
            +L+  FKE +      KL+++L +N+ NN    T     T +L
Sbjct: 4018 SLYTQFKELKEESKKRKLVEYLDQNYKNNKSYSTLQTLITFNL 4060


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 423 RKIFPTTSKTKRSTFRLPAICFTRCTRTCPASA 521
           R   P+ SK+  +TF     C + C +TC ++A
Sbjct: 81  RACIPSCSKSTGNTFACSTTCESTCDKTCASAA 113


>U49830-14|AAK31479.1|  182|Caenorhabditis elegans Hypothetical
           protein C33F10.11 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 535 LLHQIADAGHVRVQRVKQMAGRRKVERFVFDVV 437
           +L + ADA HVRV R+     +  +  FV+ +V
Sbjct: 101 ILEEDADASHVRVMRIAGFIAQSTIFLFVYTIV 133


>AF000266-10|AAC71174.2|  124|Caenorhabditis elegans Hypothetical
           protein W08F4.10 protein.
          Length = 124

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 419 LTENFPNNVKNKT-FNFSSTGHLFH-SLHAYVPSVSDLVKERKQIRLQTEYLAKLFNNTI 592
           L   F N+    T FN     ++    + AY     D +++     +Q EYL++     +
Sbjct: 10  LKHGFSNHCLQATGFNHKLWANIQRLDVQAYSSLTLDKLRKMNCETIQFEYLSEFSGTHL 69

Query: 593 NDFKLYTELYEFIERTEGVD 652
           N+F  Y +  E ++ +EG D
Sbjct: 70  NEFIRYCDGLEVVDCSEGRD 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,115
Number of Sequences: 27780
Number of extensions: 374464
Number of successful extensions: 1223
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)