Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f17
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0574 - 18867623-18868033,18869751-18870209                       30   2.0  
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    29   4.7  
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435...    29   4.7  
01_05_0733 - 24707753-24707819,24708906-24709723                       29   4.7  
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    28   8.1  
04_04_0408 + 24987218-24987760,24988406-24988534,24988617-249889...    28   8.1  
04_01_0034 - 401208-402923                                             28   8.1  

>08_02_0574 - 18867623-18868033,18869751-18870209
          Length = 289

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 559 GPGRRLVPFH-NHNARGVYEHYHCAKRNAALRRSCG 663
           GP R L  +H N N  GVY H  C K  A  R   G
Sbjct: 179 GPDRELWCYHTNINGEGVYLHVACVKHLAGKRWQAG 214


>08_02_0864 +
           21994286-21994989,21996257-21996958,21997221-21997374,
           21997494-21997838,21998323-21999240,21999312-21999640,
           21999709-21999832,21999901-22000071,22000188-22001648,
           22002647-22002910,22003866-22004189
          Length = 1831

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 152 FVDFDPLPFDAFDINTFDITNDDSIVAFQQNNIQELENFEQWFK 283
           +VD    P++ F IN  D  +DD  V    +  Q L+N +++FK
Sbjct: 221 YVDNTSDPYN-FGINRSDDEDDDYAVFHSDSKTQHLQNSDEYFK 263


>01_07_0290 -
           42542201-42542359,42542443-42542551,42542729-42543516,
           42543601-42543744,42543840-42544013,42544056-42544369,
           42544467-42544636,42544916-42545043,42545125-42545185,
           42545473-42545642,42545783-42547387,42547479-42547631,
           42547747-42547905,42548066-42548236,42548357-42548404,
           42548509-42548624,42548885-42549029,42549122-42549220
          Length = 1570

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +2

Query: 164 DPLPFDAFDINTFDITNDDSIVAFQQNNIQELENFEQWFKNNLSYSFSQKAEKVVNPNRN 343
           + L  D F IN  D T    I+   QNN  EL  + +   + +++  S     +V+P  +
Sbjct: 606 ESLLIDCFSINLGDFTVPSPILEAIQNNPLELNKYREPIMDFITH--SSAIGLLVDPKSD 663

Query: 344 WNDNTVFDNL 373
            N N V + L
Sbjct: 664 SNMNKVVEQL 673


>01_05_0733 - 24707753-24707819,24708906-24709723
          Length = 294

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 149 VFVDFDPLPFDAFDINTFDITNDDSIVAFQQ 241
           V +  D L  D F INTFD    D++VAF++
Sbjct: 201 VELGLDYLLADGFLINTFDAMEHDTLVAFKE 231


>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +2

Query: 248  IQELENFEQWFKNNLS-------YSFSQKAEKVVNPNRNWNDNTVFDNLSPWTSV 391
            ++E+EN E   K  LS       Y+++  ++K  +  R   +  VF+ L P  S+
Sbjct: 1716 LREMENLELQTKKELSSLSLEWSYAYADSSDKYASSERGMQNRAVFEKLQPHDSL 1770


>04_04_0408 +
           24987218-24987760,24988406-24988534,24988617-24988952,
           24990321-24990551
          Length = 412

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = +1

Query: 535 AAAPTSALGPGRRLVPFHNHNARGVYEHYHCAKRNAALRRS 657
           AAA  +A GP RR  P       GV    H  KR    RRS
Sbjct: 15  AAAAAAANGPHRRAAPAAGGGGGGVAIDVHGLKRRGGGRRS 55


>04_01_0034 - 401208-402923
          Length = 571

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 514 LQQIARSAAAPTSALGPGRRLVPFHNHNARGVYEHYHCAKRNA 642
           +++I R A    +     +        NA  V+ H+HC K NA
Sbjct: 230 VREIVRQARETVTNRKSKKNAAAIGKENASPVHHHHHCGKENA 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,976,613
Number of Sequences: 37544
Number of extensions: 322598
Number of successful extensions: 1154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)