Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f17
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical...    31   1.0  
Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    30   1.8  
U80027-19|AAC48129.2|  313|Caenorhabditis elegans F-box a protei...    29   3.2  
Z70757-10|CAE18045.2|  117|Caenorhabditis elegans Hypothetical p...    29   4.2  
AF039711-3|AAB96709.1|  314|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical...    29   4.2  
AF047655-9|AAC04395.1|  313|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF039711-4|ABD94101.1|  238|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z81048-5|CAB02843.1|  156|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical p...    27   9.7  
AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical...    27   9.7  

>AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical
           protein Y46G5A.17 protein.
          Length = 779

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/73 (19%), Positives = 31/73 (42%)
 Frame = +2

Query: 215 DDSIVAFQQNNIQELENFEQWFKNNLSYSFSQKAEKVVNPNRNWNDNTVFDNLSPWTSVP 394
           D S +    +N+   +  ++WF  + +   S+     +N   +W D  V  + + W+ + 
Sbjct: 433 DPSKLDHWAHNLLHGKAHDRWFDKSFNLIISKNGHVGINTEHSWGDAAVMAHFTEWSLLQ 492

Query: 395 DFGTVCHTLIGYC 433
           D   + +   G C
Sbjct: 493 DIVFIGYDENGRC 505


>Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical
           protein C38D9.2 protein.
          Length = 593

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 314 AEKVVNPNRNWNDN---TVFDNLSPWTS-VPDFGTVCHTLIGYCVRY 442
           A + +N ++ WNDN   T+  +L  + + VP        L GYC RY
Sbjct: 393 AHEAMNSHKYWNDNTNETITRHLYEFAAIVPRMENAVQKLTGYCARY 439


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 248 IQELENF--EQWFKNNLSYSFSQKAEKVVNPNRNWND 352
           +QEL  +  EQW   NL+ SF  +  KV +  R W +
Sbjct: 24  LQELHLYTDEQWKPENLAVSFVHRRRKVSSKERKWEE 60


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 248 IQELENF--EQWFKNNLSYSFSQKAEKVVNPNRNWND 352
           +QEL  +  EQW   NL+ SF  +  KV +  R W +
Sbjct: 24  LQELHLYTDEQWKPENLAVSFVHRRRKVSSKERKWEE 60


>U80027-19|AAC48129.2|  313|Caenorhabditis elegans F-box a protein
           protein 64 protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = +2

Query: 182 AFDINTFDITNDDSIVAFQQNNIQELENFEQWFKNNLSYSFSQKAEKVVNPNRNWNDNTV 361
           +FD  TFD ++D SI+ F +N I+  +       N+ + ++  + ++    N N+ +  V
Sbjct: 59  SFDTITFDFSDDQSILDFDENEIKYAD-----VDNDTTVTYKDQEKRF--ENENFLEIAV 111

Query: 362 FDNLSPWTSV 391
            D  + W +V
Sbjct: 112 KDLKTVWNNV 121


>Z70757-10|CAE18045.2|  117|Caenorhabditis elegans Hypothetical
           protein ZK287.9 protein.
          Length = 117

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -3

Query: 488 CRPIRG-SGITRRWCCC 441
           C P R  +G+T++WCCC
Sbjct: 73  CYPTREENGVTQKWCCC 89


>AF039711-3|AAB96709.1|  314|Caenorhabditis elegans Hypothetical
           protein F49D11.3a protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 593 TMPEVFMNITIVL-NETQHYDEAAALTRYWL 682
           +M ++ MNI  +L NETQ YD+  +L   WL
Sbjct: 76  SMTQLTMNIMCLLYNETQFYDDNQSLNDTWL 106


>AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.18 protein.
          Length = 921

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 209 TNDDSIVAFQQNNIQELENFEQWFKNNLSYSFSQKAEKVVNPNRNWNDNTV-FDNL 373
           T++ +++ F+ + ++  + F  W K+    SFS K  K +N  R  +   V FD L
Sbjct: 43  TDEKAVILFE-SGVRLHQTFHDWPKSQTPSSFSMKLRKHINQKRLTSIRVVGFDRL 97


>AF047655-9|AAC04395.1|  313|Caenorhabditis elegans Hypothetical
           protein C17B7.11 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 182 AFDINTFDITNDDSIVAFQQNNIQ 253
           +FD  TFD ++D SI+ F +N I+
Sbjct: 59  SFDTITFDFSDDQSILDFDENEIK 82


>AF039711-4|ABD94101.1|  238|Caenorhabditis elegans Hypothetical
           protein F49D11.3b protein.
          Length = 238

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 596 MPEVFMNITIVL-NETQHYDEAAALTRYWL 682
           M ++ MNI  +L NETQ YD+  +L   WL
Sbjct: 1   MTQLTMNIMCLLYNETQFYDDNQSLNDTWL 30


>Z81048-5|CAB02843.1|  156|Caenorhabditis elegans Hypothetical
           protein C41G7.7 protein.
          Length = 156

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = +2

Query: 245 NIQELENFEQWFKNNLSYSFSQKAEKVVNPNRNWNDNTVFDNLSPWTSV 391
           NI ++ N +++  +       +K  +   P++N    +  DN  PW +V
Sbjct: 27  NISKMSNVDRYDVHRDGIEKDRKRSRSRKPHQNGQSQSTMDNRPPWNNV 75


>Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical
           protein F54C9.9 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +2

Query: 191 INTFDITNDDSIVAFQQNNIQ---ELENFEQWFKNNLSYSFSQKAEKVVNPNRNWNDNTV 361
           IN  D  +DD +   ++ + +   E E+F QW K+    +  +KA+++ +  + W D+  
Sbjct: 174 INADDGADDDLLTERKKTSKEQEDEDEDFYQWMKSEDGKADKKKAKELKHLKKFWKDDKN 233

Query: 362 FD 367
            D
Sbjct: 234 MD 235


>Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 269 EQWFKNNLSYSFSQKAEKVVNPNRNWNDNT 358
           +QW+ N     +   A+KV+ P R +ND T
Sbjct: 529 DQWYLNYGEAEWKAAAKKVLEPLRTFNDET 558


>Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 269 EQWFKNNLSYSFSQKAEKVVNPNRNWNDNT 358
           +QW+ N     +   A+KV+ P R +ND T
Sbjct: 529 DQWYLNYGEAEWKAAAKKVLEPLRTFNDET 558


>AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical
           protein Y73F8A.30 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 590 ITMPEVFMNITIVLN--ETQHYDEAAALTRYWLG 685
           I +P+ ++  ++V+N  ET+ Y      T YW G
Sbjct: 81  IWLPDTYLYNSVVMNREETERYINVVVTTNYWKG 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,689
Number of Sequences: 27780
Number of extensions: 274184
Number of successful extensions: 984
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)