Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f15
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    26   3.7  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   8.6  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   8.6  

>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 283 MQAIKCVVVGDG*V--RCISTSFS 348
           M  IKCVVVGDG V   C+  S++
Sbjct: 1   MPTIKCVVVGDGAVGKTCLLISYT 24


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 7/35 (20%), Positives = 18/35 (51%)
 Frame = +3

Query: 231 VSIRCVLFCDKDWIKSKNAGNQVCCCWRWVSSLYF 335
           ++++C+++C   + K      +V C +  + S  F
Sbjct: 339 IALQCLIYCSNPYFKRLELALKVSCAYGHIDSSLF 373


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 338 VEIQRTHPSPTTTHLIACIFAFYPIFVTK*NTTDAYTEQ 222
           V I   HP+   ++++    + YP+ +   N T+ Y E+
Sbjct: 654 VSISELHPAVLVSYMVMMYISVYPVAINMRN-TNVYEER 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,470
Number of Sequences: 5004
Number of extensions: 35642
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)