Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f15
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82276-7|CAB05247.2|  195|Caenorhabditis elegans Hypothetical pr...    30   1.1  
X68492-1|CAA48506.1|  191|Caenorhabditis elegans small ras-relat...    30   1.1  
U55018-1|AAB40386.1|  195|Caenorhabditis elegans CeRac2 protein.       30   1.1  
L04287-1|AAA28141.1|  191|Caenorhabditis elegans rac1 protein pr...    30   1.1  
L03711-1|AAA28140.1|  191|Caenorhabditis elegans rac1 protein pr...    30   1.1  
AF226867-1|AAF33846.1|  191|Caenorhabditis elegans cell-corpse e...    30   1.1  
AF038608-16|AAC25821.1|  191|Caenorhabditis elegans Cell death a...    30   1.1  
AF038608-15|AAC25820.1|  129|Caenorhabditis elegans Cell death a...    30   1.1  
U23452-10|AAK31543.1|  191|Caenorhabditis elegans Hypothetical p...    28   3.4  
S82771-1|AAC05600.1|  191|Caenorhabditis elegans cdc42 homolog p...    28   3.4  

>Z82276-7|CAB05247.2|  195|Caenorhabditis elegans Hypothetical
           protein K03D3.10 protein.
          Length = 195

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +1

Query: 283 MQAIKCVVVGDG*V--RCISTSFS 348
           MQAIKCVVVGDG V   C+  S++
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLLSYT 24


>X68492-1|CAA48506.1|  191|Caenorhabditis elegans small ras-related
           protein protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +1

Query: 283 MQAIKCVVVGDG*V--RCISTSFS 348
           MQAIKCVVVGDG V   C+  S++
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYT 24


>U55018-1|AAB40386.1|  195|Caenorhabditis elegans CeRac2 protein.
          Length = 195

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +1

Query: 283 MQAIKCVVVGDG*V--RCISTSFS 348
           MQAIKCVVVGDG V   C+  S++
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLLSYT 24


>L04287-1|AAA28141.1|  191|Caenorhabditis elegans rac1 protein
           protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +1

Query: 283 MQAIKCVVVGDG*V--RCISTSFS 348
           MQAIKCVVVGDG V   C+  S++
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYT 24


>L03711-1|AAA28140.1|  191|Caenorhabditis elegans rac1 protein
           protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +1

Query: 283 MQAIKCVVVGDG*V--RCISTSFS 348
           MQAIKCVVVGDG V   C+  S++
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYT 24


>AF226867-1|AAF33846.1|  191|Caenorhabditis elegans cell-corpse
           engulfment proteinCED-10 protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +1

Query: 283 MQAIKCVVVGDG*V--RCISTSFS 348
           MQAIKCVVVGDG V   C+  S++
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYT 24


>AF038608-16|AAC25821.1|  191|Caenorhabditis elegans Cell death
           abnormality protein10, isoform b protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +1

Query: 283 MQAIKCVVVGDG*V--RCISTSFS 348
           MQAIKCVVVGDG V   C+  S++
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYT 24


>AF038608-15|AAC25820.1|  129|Caenorhabditis elegans Cell death
           abnormality protein10, isoform a protein.
          Length = 129

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +1

Query: 283 MQAIKCVVVGDG*V--RCISTSFS 348
           MQAIKCVVVGDG V   C+  S++
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYT 24


>U23452-10|AAK31543.1|  191|Caenorhabditis elegans Hypothetical
           protein R07G3.1 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +1

Query: 283 MQAIKCVVVGDG*V--RCISTSFS 348
           MQ IKCVVVGDG V   C+  S++
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYT 24


>S82771-1|AAC05600.1|  191|Caenorhabditis elegans cdc42 homolog
           protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +1

Query: 283 MQAIKCVVVGDG*V--RCISTSFS 348
           MQ IKCVVVGDG V   C+  S++
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYT 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,564,055
Number of Sequences: 27780
Number of extensions: 196870
Number of successful extensions: 382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)