Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f13
         (651 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2140|AAF53151.1|   69|Drosophila melanogaster CG6770-PA...   118   5e-27
X04228-2|CAA27809.1|   96|Drosophila melanogaster protein ( Dros...    28   9.6  
X04227-2|CAA27806.1|   96|Drosophila melanogaster URF 2 protein.       28   9.6  
AE014297-650|AAF54148.1|  358|Drosophila melanogaster CG18268-PA...    28   9.6  

>AE014134-2140|AAF53151.1|   69|Drosophila melanogaster CG6770-PA
           protein.
          Length = 69

 Score =  118 bits (285), Expect = 5e-27
 Identities = 49/62 (79%), Positives = 56/62 (90%)
 Frame = +1

Query: 100 MSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 279
           MSEA FDEY++YNFDHDKHIF+GH GKQR K+EA+EHTNHFDPSGHSRKI+TKLMN  +N
Sbjct: 1   MSEAHFDEYEHYNFDHDKHIFSGHSGKQRNKREANEHTNHFDPSGHSRKILTKLMNTNNN 60

Query: 280 KK 285
            K
Sbjct: 61  NK 62


>X04228-2|CAA27809.1|   96|Drosophila melanogaster protein (
           Drosophila mRNA forCc gene from dopa decarboxylase gene
           cluster;  mapping2.0 kb from the 5'end of Ddc gene.  ).
          Length = 96

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 347 TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 439
           +I  P  RRT   R+P   S GCS   S +HP
Sbjct: 11  SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42


>X04227-2|CAA27806.1|   96|Drosophila melanogaster URF 2 protein.
          Length = 96

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 347 TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 439
           +I  P  RRT   R+P   S GCS   S +HP
Sbjct: 11  SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42


>AE014297-650|AAF54148.1|  358|Drosophila melanogaster CG18268-PA
           protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 7/148 (4%)
 Frame = +1

Query: 175 GKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH*MDC*SIDNYG*QKDY* 354
           GK+  K E    T H   + H R+ +      EHN  T N    ++C  +D  G +    
Sbjct: 32  GKKSFKLEGVSVTLHGVSTVHWRESLRGPPEIEHNDSTGN----LECPKVDYNGSKVHIN 87

Query: 355 VAKRKEDAIADTRGV-----FGWMLVSEIDGTSKAFFAHTKFLLRPLTEAAIXNGTTPQM 519
             K+  + +    G      F + L   +  T +  F + +++L+ + E    +    Q 
Sbjct: 88  ETKKLNEVLQLENGTFRLGDFNFQLPENLPATCRLPFGNVEYVLKVVLERRGTHNKCFQQ 147

Query: 520 SQAVSRYI--LDVTPFQCLISNNGLVSP 597
              + + +   D+ P     +N GL  P
Sbjct: 148 RLVIRKCVELADLKPQYMETANMGLTLP 175


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,628,860
Number of Sequences: 53049
Number of extensions: 600355
Number of successful extensions: 1360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)