Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f05
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0150 - 2244757-2245303,2252925-2253277                           29   2.9  
01_07_0229 + 42161770-42164562                                         29   2.9  
04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861...    29   3.8  
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    28   5.0  
03_01_0222 - 1756769-1756801,1756889-1756917,1756975-1757859,175...    28   5.0  
01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600...    28   5.0  
04_04_1258 + 32165918-32166041,32167218-32167384,32167569-321677...    28   6.6  
01_01_0285 - 2360799-2362631                                           28   6.6  

>09_01_0150 - 2244757-2245303,2252925-2253277
          Length = 299

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 325 VLSNKPPMYSFLKEWFLLP 381
           V  + PP Y+FLKE FLLP
Sbjct: 4   VQRSTPPFYNFLKEGFLLP 22


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 61  CLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKI 207
           CL+LN  +IK   + + +   LKYL      F E + +     P+L K+
Sbjct: 556 CLKLNQTLIKSLPVAIGQLTKLKYLNLSYMDFLEKIPYGVI--PNLSKL 602


>04_04_0487 -
           25585229-25585540,25585627-25585745,25586029-25586194,
           25586295-25586427,25586527-25586618,25586739-25586925,
           25587183-25587271,25587318-25587379,25587462-25587567,
           25587754-25588052,25588181-25588288,25588369-25588439,
           25588792-25588871
          Length = 607

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 229 CMQIFKAPADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYSFLKEWF---LLPHYKV 393
           CM+  +   +   +I  ++  +F  P +G +  + N P +++ L  +F    +P+YKV
Sbjct: 469 CMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSGHFMPNYKV 526


>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 450 FGQHSHNRRGANSNSRFVCV*QLAGIARNGLRFSLVVVWQ 569
           F  + HNRR    NS+ V +  L+ +    + F + ++W+
Sbjct: 204 FSANVHNRRHQKINSKSVAIIALSAVVLVLMSFGICIIWK 243


>03_01_0222 -
           1756769-1756801,1756889-1756917,1756975-1757859,
           1758244-1759273,1759354-1759401,1759626-1760480
          Length = 959

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 43  LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFE 144
           LQ  W   RL + I+KR  +    + DLKYL  E
Sbjct: 860 LQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDE 893


>01_01_0774 -
           6004040-6004371,6004634-6005215,6005391-6005657,
           6005845-6006163
          Length = 499

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = +1

Query: 82  IIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPADN 261
           II+RH L    ++ L +   E +   + + F +  D    K+I N ++  +++F+  A  
Sbjct: 397 IIRRHGLASDLFSCLLFNELEAFNPRDQLAFAYVRDQMSPKVIMNMFD--VEVFEQIA-- 452

Query: 262 MCDIRHNIKR 291
             + RHN+KR
Sbjct: 453 -VEYRHNLKR 461


>04_04_1258 +
           32165918-32166041,32167218-32167384,32167569-32167769,
           32168472-32168631,32168729-32168942,32169160-32169307
          Length = 337

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 94  HVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIF 243
           HVL    ++D++YL  EK   + Y + +   +   CK+ E N    + +F
Sbjct: 143 HVLDEDSWSDVEYLTKEKPPAWAYSVSKVLMEKAACKLAEENNISLITVF 192


>01_01_0285 - 2360799-2362631
          Length = 610

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +1

Query: 100 LVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPADNMCDIRH 279
           L+++    + Y+  E Y+FF ++   +     +C+ + N  ++   + + P   +C    
Sbjct: 189 LLVTRLVIVWYIFLESYQFFTFIFSDWHKVKMMCRYVRNE-SWHRALMEVPLKVLCHF-S 246

Query: 280 NIKRAFKTPVLGHMCVLSNKPPMY--SFLKEWF 372
            I R +K   +G   +L N  P +  +FL  WF
Sbjct: 247 TITRYWK-GTIGQYFLLDNIHPHWIKTFL-SWF 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,720,300
Number of Sequences: 37544
Number of extensions: 370559
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)