Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24f04
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.11
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.19
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.77
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.3
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 1.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.8
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 1.8
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 1.8
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 2.3
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 26 2.3
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 3.1
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 4.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 4.1
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 5.4
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 5.4
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 25 5.4
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 25 7.2
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 25 7.2
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.2
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 7.2
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 7.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 7.2
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 25 7.2
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.5
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 24 9.5
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 24 9.5
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 24 9.5
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 9.5
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.7 bits (66), Expect = 0.11
Identities = 21/98 (21%), Positives = 46/98 (46%)
Frame = +3
Query: 57 NLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQ 236
NL N ++ S+K + +I D PK +++ LN+VP + +DD +L + +
Sbjct: 333 NLANTESVNASDEGSDKSQKGIISDS--PKLLSIPLNNVPSKSLNDDITQDELNSSNADV 390
Query: 237 KDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNN 350
++ + E N+++ T ++ T D +++
Sbjct: 391 DEEVIETTS-LEEKNVDNQEFVTSISNGNQTLEDTSHS 427
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 29.9 bits (64), Expect = 0.19
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 150 VTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQ 311
VTL L VP+ + S DLPLT D+F + L I ++TEQ
Sbjct: 640 VTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFSTIYAWSDYLYIVGIDMETEQ 693
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.77
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Frame = -2
Query: 394 PSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVS----KGLMAFIKSSFCSG 227
PST SSS S++ SS + +S S +I S S S ++ SS S
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP 300
Query: 226 VVNGKSIEKLSSSVHS-SGTLFRRNVTFLGSFSSGIKSA 113
+I SSS S S TL +++ SFSS S+
Sbjct: 301 TSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339
Score = 26.6 bits (56), Expect = 1.8
Identities = 33/118 (27%), Positives = 45/118 (38%)
Frame = -2
Query: 406 LSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSG 227
+S S+ SSSF+STT SS + S S S S SS S
Sbjct: 343 ISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSS 402
Query: 226 VVNGKSIEKLSSSVHSSGTLFRRNVTFLGSFSSGIKSALILLELSDIMVVACKFNKLI 53
+ + KS SS + F N T S SS S+ L LS ++ + L+
Sbjct: 403 LSSHKSSSSSKSSSAPVSSAFYHNST--SSRSSSHSSSHSLSSLSSKPILTASSSSLL 458
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 1.3
Identities = 29/98 (29%), Positives = 45/98 (45%)
Frame = -2
Query: 394 PSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVVNG 215
PS++ SSS +S++ L +P + + S IIS S +S + SS S +
Sbjct: 611 PSSI-SSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLS-TYSS 668
Query: 214 KSIEKLSSSVHSSGTLFRRNVTFLGSFSSGIKSALILL 101
I S+ V SS +L + S SS I S+ L+
Sbjct: 669 SVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLV 706
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 129 DENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQK 239
+E +P++V + L P E DDN ++ + E+K
Sbjct: 85 NEKEPRDVRISLTFQPNEYLQDDNLTLVKEVRIKEEK 121
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 288 SDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGL 398
SDI +T + P G N + KV + +EDE D L
Sbjct: 4375 SDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDEL 4411
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/62 (20%), Positives = 27/62 (43%)
Frame = +3
Query: 96 NSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFET 275
N + + ++ K + + +P ++ F+ID P+Q+D +NA+ F
Sbjct: 885 NEKGLSTEQRDEKKHAKVESFQRQEMPRSLFEEIFFAIDSLTPNPQQQDTVINAVPTFAP 944
Query: 276 LN 281
N
Sbjct: 945 YN 946
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 1.8
Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Frame = +3
Query: 93 LNSNKIKADL-IPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPF 269
++S+ + L I ++DPK+ + EC + D + + P + + +
Sbjct: 1 MSSSSVSNTLSIETKSDPKDPAFVASQESTECNEHDTTQLSGSSSEPLENNSSLTRSTDD 60
Query: 270 ETLNIESDIIKTEQ-----TDAPATSGDDNNNRKVVDANEDEYTVDG 395
++ I S ++ + +D T ++NNN D E+ T G
Sbjct: 61 PSVEIRSKLVSPDNEANLLSDQNITISNENNNEN--DTTEEAETSSG 105
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 2.3
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +3
Query: 189 DDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDA 368
+++N + PL E D F + P L++ E PA+ +NNN DA
Sbjct: 641 NEENSELPPPLEPAEIGDPFRSVNDPRRVLSLPHMASADEDHRIPASDNQNNNNN---DA 697
Query: 369 N 371
N
Sbjct: 698 N 698
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 18 KINLCNIQFQ-SLINLLNLQATTIMSLNSNKIKADLIPDEND 140
K+ L +QFQ S+ NL+N Q ++ ++ +P+EN+
Sbjct: 314 KLELEVVQFQMSIANLINTQVEVTNTIEELGLRCRPLPNENE 355
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 204 SIDLPLTTPEQKDDFMNAIKPFETL-NIESDIIKT 305
S+D+P+ D ++A+K F+TL +++ +II T
Sbjct: 1174 SVDVPVIIKISLDSHLDALKMFDTLFHVKLEIITT 1208
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 270 ETLNIESDIIKTEQTDAPATSGDDNNN 350
ET N+ES K D A S +DNNN
Sbjct: 110 ETHNLESPAWKHADYDGVAASVNDNNN 136
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 4.1
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = -2
Query: 391 STVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVVNGK 212
+TV SSS +STT SSP + + + S S S + SS S +
Sbjct: 125 TTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184
Query: 211 SIEKLSSSVHSSGT 170
S SSS SS +
Sbjct: 185 SSSSSSSSSSSSSS 198
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 333 GDDNNNRKVVDANEDEYTVDGLKLKSK 413
G N V+D NEDE +V ++L+ K
Sbjct: 480 GFKNKGNIVIDENEDEPSVQTIQLQGK 506
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 250 IKSSFCSGVVNGKSIEK 200
++SSFCSG+ N + +EK
Sbjct: 97 LQSSFCSGIENLQHVEK 113
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 274 VSKGLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFL 143
V++G MA+ + ++ V S S+H S +L RNV +L
Sbjct: 36 VTQGNMAYAQKNYEEAVDKYGQALMQSESIHGSESLENRNVLWL 79
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 24.6 bits (51), Expect = 7.2
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 222 TTPEQKDDFMNAIKPFETLNIESDIIKTEQ-TDAPATSGDDNNNRKVVDAN 371
T+P ++ + ++ PFETL ++S + Q +DAP+ + + NNR V N
Sbjct: 55 TSPRKRSVNLKSL-PFETLTLDSAPLGPLQFSDAPSMAPE--NNRLEVGLN 102
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 7.2
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 283 IFKV--SKGLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFL 143
IF+V S + ++ +F +G G+S + +VH + +FRR + +
Sbjct: 88 IFRVNGSSKRIQILQKAFSTGPDYGRSFDWEGYTVHDAANVFRRFINLM 136
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 24.6 bits (51), Expect = 7.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 135 NDPKNVTLRLNSVPEECTDDDN 200
NDP + L + ++PEE +++N
Sbjct: 237 NDPTSTALEVRNIPEEHFNEEN 258
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 24.6 bits (51), Expect = 7.2
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 243 DFMN-AIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTV 389
DF N A+ E L+ E I + + P+T+ + N D N+D +++
Sbjct: 610 DFENPAVSASEKLSTEEIIPQESNFEEPSTTKKEGNVDTKEDGNDDVFSL 659
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 24.6 bits (51), Expect = 7.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 231 EQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANE 374
E D F N+I + + N ++ TD P+ + DD + KVV+ +
Sbjct: 336 ESADSFNNSIDSYISPN------QSPNTDVPSLNRDDTTDPKVVNTGD 377
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 24.6 bits (51), Expect = 7.2
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 129 DENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTE 308
+E+D T ++S + D+N + + P+ +DFM+ +PF L+ + + E
Sbjct: 466 NEDDLNQFTSNISSSSKP-RKDNNKTANSSKPIPDS-EDFMDITRPFNILSPSKEALSEE 523
Query: 309 Q 311
Q
Sbjct: 524 Q 524
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.6 bits (51), Expect = 7.2
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 261 KPFETLNIESDI--IKTEQTDAPATSGDDNNNRKVVDANEDEYTVD 392
+P E +N + +I ++T++ DAP T+ D ++ + D T+D
Sbjct: 65 QPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITID 110
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 24.2 bits (50), Expect = 9.5
Identities = 21/102 (20%), Positives = 41/102 (40%)
Frame = +3
Query: 45 QSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLT 224
Q+ NL ++ S S + +L+P+E P+ L VPEE + D P+
Sbjct: 72 QTYENLESISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVP 131
Query: 225 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNN 350
+ +P N + +++T + + D +N+
Sbjct: 132 EEPLPGEPPLPNEPVPETNCHKESPLSDETVSETSKNDTSNS 173
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 9.5
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = -2
Query: 391 STVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVVNGK 212
S S+S +S++ SS +++ +S ++ S S S + SSF + +V+
Sbjct: 28 SAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSS 87
Query: 211 SIEKLSSS 188
S + SSS
Sbjct: 88 SQQSSSSS 95
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 24.2 bits (50), Expect = 9.5
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 252 NAIKPFETLNIESDIIKTEQTDAPATS-GDDNNNRKVVDANEDEYTVD 392
+A P E+L+ + + Q A ++ G D +N K+ + +DE+ D
Sbjct: 55 SAEPPSESLDDNISALNSLQRSASSSEKGSDEDNEKLGSSEDDEFDDD 102
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.2 bits (50), Expect = 9.5
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +3
Query: 9 IKMKINLCNIQFQSLINLLNLQATTIMSLNS----NKIKADLIPDENDPKNVTLRLNSVP 176
+K+ L QFQ N L +TIMS NS N ++ D D D N L N+V
Sbjct: 1297 LKLSSELTPQQFQLYENFDRLSLSTIMSNNSFTSLNGLRTD-SADSTDALNSNLN-NTVE 1354
Query: 177 EE 182
E
Sbjct: 1355 NE 1356
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 24.2 bits (50), Expect = 9.5
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Frame = -2
Query: 424 YATYFDLSFKPS-TVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFI 248
Y+ D F S T+ S+S A+ T LS+ + + S+ S+++ + S
Sbjct: 433 YSAKGDCDFSGSATLVSASSATGTCASYLSAAGSSATNAISLTADSNAVSRNSSASTMST 492
Query: 247 KSSFCSGVVNGKSIEKLSSSVHSSG-TLFRRN--VTFLGSFSSG 125
+ SG N SSS SSG + + N +TFL G
Sbjct: 493 SYTSGSGSSNSSGSSSNSSSKSSSGASSYNLNMVITFLSVVIGG 536
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 292 SDSIFKVSKGLMAFIKSSFCSGVVNGKSIEKLS 194
S S +S + + +K + SGVV + +EK S
Sbjct: 228 SKSFVSISSPVQSTVKPTKASGVVKSEKVEKRS 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,300
Number of Sequences: 5004
Number of extensions: 34727
Number of successful extensions: 165
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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