Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f04
         (452 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   3.8  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    23   6.7  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    23   6.7  
DQ974161-1|ABJ52801.1|  409|Anopheles gambiae serpin 2 protein.        22   8.8  
AF203339-1|AAF19834.1|  156|Anopheles gambiae immune-responsive ...    22   8.8  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
 Frame = -2

Query: 226  VVNGKSIEKLSSSVHSSGTLF-----RRNVTF-LGSFSSGI 122
            +V+ + +EK++++VH SG  F     R+  TF +G F   +
Sbjct: 987  MVDWEFVEKIATNVHRSGPTFIPDEARKGYTFDVGKFRDAV 1027



 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 390  PPCTRPRSHRPLFDYYYHRR 331
            P  T P S+   F+ YYHR+
Sbjct: 1052 PKSTFPGSNYATFEEYYHRK 1071


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 415 YFDLSFKPSTVYSSSFASTTFRLLLSSPLVAG 320
           YF L+F   T  S  F S  +    SSP++ G
Sbjct: 63  YFFLTFLVVTACSIYFISNVYIKWQSSPIIIG 94


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 415 YFDLSFKPSTVYSSSFASTTFRLLLSSPLVAG 320
           YF L+F   T  S  F S  +    SSP++ G
Sbjct: 63  YFFLTFLVVTACSIYFISNVYIKWQSSPIIIG 94


>DQ974161-1|ABJ52801.1|  409|Anopheles gambiae serpin 2 protein.
          Length = 409

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 180 ECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETL 278
           E    DN   DL + T    DDF+  I  ++ +
Sbjct: 107 ESAQQDNKDYDLNIATNFFVDDFIEVINKYQQI 139


>AF203339-1|AAF19834.1|  156|Anopheles gambiae immune-responsive
           serpin-related proteinISerpF1 protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 180 ECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETL 278
           E    DN   DL + T    DDF+  I  ++ +
Sbjct: 8   ESAQQDNKDYDLNIATNFFVDDFIEVINKYQQI 40


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 423,412
Number of Sequences: 2352
Number of extensions: 8248
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38694201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)