Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24f04
(452 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical pr... 31 0.30
Z81483-3|CAB03961.1| 152|Caenorhabditis elegans Hypothetical pr... 31 0.39
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr... 30 0.69
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 29 1.6
U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical pr... 28 3.7
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 28 3.7
AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical... 28 3.7
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 28 3.7
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 27 4.8
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 27 4.8
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 27 4.8
Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z68217-1|CAA92465.1| 461|Caenorhabditis elegans Hypothetical pr... 27 6.4
AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative treh... 27 6.4
AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans trehalose-6-p... 27 6.4
Z98860-2|CAB11545.1| 337|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81037-4|CAB02747.2| 391|Caenorhabditis elegans Hypothetical pr... 27 8.4
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 8.4
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 8.4
>Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical
protein K05C4.5 protein.
Length = 656
Score = 31.5 bits (68), Expect = 0.30
Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +3
Query: 57 NLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQ 236
++L++++ T++S +KA+ EN+ + + + EE + + + + +
Sbjct: 558 SILDVESGTVVSAQDGPLKANKKQRENEDTRLLVNGMRLREEVEQNGD---GMSPSKRTR 614
Query: 237 KDDFMNAIKPFETLNIESDIIKTEQT--DAPATSG 335
++ F N I PF+++N S I++ E T + P T+G
Sbjct: 615 RNSFKNEIPPFQSMN--SRIVQLEVTGDEIPKTAG 647
>Z81483-3|CAB03961.1| 152|Caenorhabditis elegans Hypothetical
protein C43D7.5 protein.
Length = 152
Score = 31.1 bits (67), Expect = 0.39
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +3
Query: 147 NVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPA 326
NV ++++ + C + + +S T ++KD+F N +T+N + E+ D
Sbjct: 7 NVDTKVDNRKDNCDNTNTYS-----HTVDRKDNFDNTTTNTKTVNRNDNCNNQEEGDVNM 61
Query: 327 TSGDDN-NNRKVVDANEDEYTV 389
+DN NNR+ ++ Y++
Sbjct: 62 YRRNDNCNNREATNSRSANYSI 83
>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
protein C04A11.3 protein.
Length = 1228
Score = 30.3 bits (65), Expect = 0.69
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 KPFETLNIESDIIKTEQTDAPAT-SGDDNNNRKVVDANEDEYTVDGLKLKSKYV 419
KP T + +D+ KT AP G + NR+ + Y +DG+++ S V
Sbjct: 767 KPVPTPSTSTDVQKTNSNVAPRPLGGRKDGNRQTITKKTRTYMIDGVQVTSTTV 820
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 282 IESDIIKTEQTDAPATSGDDNNNR-KVVDANEDEYTVDGLKLK 407
+ES +I E + G D + R KVV+ +++E T D K +
Sbjct: 288 VESSVISQEVPETGYGDGGDKSKREKVVETHQEEQTYDSFKFE 330
>U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical
protein C18F3.4 protein.
Length = 306
Score = 27.9 bits (59), Expect = 3.7
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 111 KADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETL-NIE 287
+ +L D ND + T NSV E DD++ S + L+ P ++ + P +L I
Sbjct: 54 QCNLRDDPNDDQPTTSS-NSVKESINDDESNSENNKLSPPRRQSN------PHSSLPAIS 106
Query: 288 SDIIKTEQTDAPATSGDDNN 347
S +K E TD+ S N+
Sbjct: 107 SSTVKNEPTDSWTPSALSND 126
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 99 SNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIK 263
+ K K D DE P+N + + E +DDN S D E+++ F+ +K
Sbjct: 312 AGKSKFDSSSDEESPENEKFPVGNGKSEYQEDDNDSED---DLEERREQFIRCVK 363
>AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical
protein Y11D7A.12a protein.
Length = 507
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 225 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEY 383
TPE+ M+ P +T I II TE D+P+ RK D +E+
Sbjct: 326 TPERYTQHMSPNLPLQTATIAPLIIPTENYDSPSYR-QPAIKRKATDLTNEEH 377
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 126 PDENDPKNVTLRLNSVPEECTDDD 197
PD N N +RL VP C +DD
Sbjct: 149 PDSNGEVNHVIRLRGVPWSCKEDD 172
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
K04G2.8b protein.
Length = 1188
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +3
Query: 141 PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 287
PK L+ PEE T DD ++ P+ EQ+ +MNA+K + NIE
Sbjct: 1084 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1135
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
K04G2.8a protein.
Length = 1186
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +3
Query: 141 PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 287
PK L+ PEE T DD ++ P+ EQ+ +MNA+K + NIE
Sbjct: 1082 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1133
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = -2
Query: 358 TFRLLLS---SPLVAGASVCSVLIISDSIFKVSKGL 260
TF L +S S +V AS+CSVL+I + I K+S+ +
Sbjct: 2 TFALTVSCATSAVVITASLCSVLVIMNDINKLSEDI 37
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +3
Query: 141 PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 287
PK L+ PEE T DD ++ P+ EQ+ +MNA+K + NIE
Sbjct: 1082 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1133
>Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical
protein F19H8.1 protein.
Length = 1229
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 234 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSG 335
+ DDF+ + ET+ +++D+ K D PA G
Sbjct: 549 KNDDFLKFVDLPETIKLKNDLRKRVMGDTPAPDG 582
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
protein R09H10.5 protein.
Length = 1603
Score = 27.1 bits (57), Expect = 6.4
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2
Query: 253 FIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFLG---SFS-SGIKSALILLE 98
F+ ++F + VNG S +SSS SS + F +G S+S SG + L LE
Sbjct: 706 FVLTTFKARTVNGASFPDVSSSKFSSASAFLNATNDIGIGYSYSPSGPQPGLFALE 761
>Z68217-1|CAA92465.1| 461|Caenorhabditis elegans Hypothetical
protein F58G6.1 protein.
Length = 461
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 216 PLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDG 395
P TP+ D N + +TL + + D S + KV++ANED+ DG
Sbjct: 382 PEPTPKPLDGITNEKR--KTLYFVTSTHNYKAVDTDELSFEQGVQIKVIEANEDDQLDDG 439
Query: 396 LKL 404
+L
Sbjct: 440 WRL 442
>AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative
trehalose 6-phosphatesynthase protein.
Length = 1229
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 234 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSG 335
+ DDF+ + ET+ +++D+ K D PA G
Sbjct: 549 KNDDFLKFVDLPETIKLKNDLRKRVMGDTPAPDG 582
>AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans
trehalose-6-phosphate synthase protein.
Length = 1230
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 234 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSG 335
+ DDF+ + ET+ +++D+ K D PA G
Sbjct: 549 KNDDFLKFVDLPETIKLKNDLRKRVMGDTPAPDG 582
>Z98860-2|CAB11545.1| 337|Caenorhabditis elegans Hypothetical
protein Y26G10.2 protein.
Length = 337
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 123 IPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQK 239
IPD++ K +T +++ +C D+ N + + T +QK
Sbjct: 162 IPDQSSIKEMTKQISPYYPDCIDNPNIIVFISPDTEKQK 200
>Z81037-4|CAB02747.2| 391|Caenorhabditis elegans Hypothetical
protein C17E4.6 protein.
Length = 391
Score = 26.6 bits (56), Expect = 8.4
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +3
Query: 282 IESDIIKTEQTDAPATSGDDNN--NRKVVDANEDE--YTVDGLKLKSK 413
++SD K E+ D PA+ G+++ RK NE + T D + K+K
Sbjct: 147 VDSDFDKPEEEDEPASGGEEDGRPRRKKRKFNEPKRGMTADDILAKNK 194
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 249 MNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNR 353
M+ + F+ LN + ++KTE+ + P NNN+
Sbjct: 1 MDEFELFQQLNQTAPLVKTEEPEVPDEFQQANNNQ 35
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 249 MNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNR 353
M+ + F+ LN + ++KTE+ + P NNN+
Sbjct: 1 MDEFELFQQLNQTAPLVKTEEPEVPDEFQQANNNQ 35
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,363,609
Number of Sequences: 27780
Number of extensions: 189262
Number of successful extensions: 688
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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