Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24f03
         (649 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome s...    36   1.1  
UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice ...    35   2.0  
UniRef50_Q2HFS0 Cluster: Putative uncharacterized protein; n=1; ...    34   2.6  
UniRef50_Q0RIU2 Cluster: Putative glycosyl transferase; n=1; Fra...    34   3.4  
UniRef50_Q4SW41 Cluster: Chromosome 3 SCAF13691, whole genome sh...    33   6.0  
UniRef50_Q30YG7 Cluster: Peptide methionine sulfoxide reductase ...    33   7.9  
UniRef50_Q2RAK3 Cluster: Expressed protein; n=4; Oryza sativa|Re...    33   7.9  

>UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome
           shotgun sequence; n=5; Tetraodontidae|Rep: Chromosome 17
           SCAF14563, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 760

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 522 ITARGVRYKSATAYCD*TVPVK-WSLISRSHEYNYVPKNGSTELCQETSRRVGVLL 358
           +T RG+R K     C      K WSL     +Y++V  N ST++    S R+GV L
Sbjct: 391 VTYRGIRRKGNANECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 446


>UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice
           Isoform 1 of Tripartite motif protein 16; n=1; Takifugu
           rubripes|Rep: Homolog of Homo sapiens "Splice Isoform 1
           of Tripartite motif protein 16 - Takifugu rubripes
          Length = 446

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 522 ITARGVRYKSATAYCD*TVPVK-WSLISRSHEYNYVPKNGSTELCQETSRRVGVLL 358
           +T RG+R K     C      K WSL     +Y++V  N ST++    S R+GV L
Sbjct: 360 VTYRGIRRKGNGNECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 415


>UniRef50_Q2HFS0 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 1896

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 324 MQQTPKSRIRAVMTASMRMIAPVFSTSTSRHFSKARGFIPILILSTRSEVVNK 166
           M  TP+  +RA++ A  R++A V    T+ HF+ ARG   IL +     V N+
Sbjct: 591 MSSTPEV-VRALVDAGARLVARVADGRTALHFAAARGHAEILKILLDKSVANE 642


>UniRef50_Q0RIU2 Cluster: Putative glycosyl transferase; n=1;
           Frankia alni ACN14a|Rep: Putative glycosyl transferase -
           Frankia alni (strain ACN14a)
          Length = 428

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 444 RLMTTLPVPSN--RNTPLHSCSERHAQLFLPPAATVSV 551
           R   T+PVP+N  R TPL S +  HA+L  PP A V+V
Sbjct: 194 RTTQTVPVPANIPRATPLPSRARLHARLDAPPDAEVAV 231


>UniRef50_Q4SW41 Cluster: Chromosome 3 SCAF13691, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 3
           SCAF13691, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 559

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
 Frame = +3

Query: 318 VALIIVAILLCVGRARH----LRGGMSPGIVPWN-RSLEHNYT--REIVRLMTTLPVPSN 476
           V +  V + +CV R RH    +   +S G +P   R LE N    R + R +  LP+ + 
Sbjct: 391 VCVWCVCVCVCVWRIRHFFCSVCSSLSAGTLPVTFRCLEENLKIDRRVTRFV--LPIGAT 448

Query: 477 RNTPLHSCSERHAQLFLPPAATVSVEGGDACAPEYPGTASCKSAGVCXSAG 629
            N    +  E  A +F+     +S++GG         T +   A    SAG
Sbjct: 449 INMDGTALYEAVAAIFIAQMNDISLDGGQIVTVSMTATLASVGAASIPSAG 499


>UniRef50_Q30YG7 Cluster: Peptide methionine sulfoxide reductase
           precursor; n=1; Desulfovibrio desulfuricans G20|Rep:
           Peptide methionine sulfoxide reductase precursor -
           Desulfovibrio desulfuricans (strain G20)
          Length = 213

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 628 PALXHTPADLHDAVPGYSGAHASPPSTETVAAGG 527
           P    TP  L + + GY+G H   PS E V+AGG
Sbjct: 56  PPFDRTPGVL-ETISGYTGGHTEHPSYEQVSAGG 88


>UniRef50_Q2RAK3 Cluster: Expressed protein; n=4; Oryza sativa|Rep:
           Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 629

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 610 PADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSLQE 494
           PADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,345,697
Number of Sequences: 1657284
Number of extensions: 11916749
Number of successful extensions: 31380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31373
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)